Results 81 - 100 of 361 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6497 | 3' | -54.3 | NC_001847.1 | + | 60865 | 0.71 | 0.749056 |
Target: 5'- gGGCGUccagcGCGggGCGGccgCGCCCG-GGa -3' miRNA: 3'- gUCGUAu----UGCuuCGUCa--GCGGGCgCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 43442 | 0.7 | 0.757837 |
Target: 5'- cCGGCGUcgcgacccggggcGACGgcGCGGUCGCCgaGCGc -3' miRNA: 3'- -GUCGUA-------------UUGCuuCGUCAGCGGg-CGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 81818 | 0.7 | 0.758807 |
Target: 5'- aGGCG--GCGggGCGcgccgucuGUCGCCCGCc- -3' miRNA: 3'- gUCGUauUGCuuCGU--------CAGCGGGCGcc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 99018 | 0.7 | 0.768442 |
Target: 5'- aCAGCGcugccucgGGCGGcgAGCAc-CGCCCGCGGa -3' miRNA: 3'- -GUCGUa-------UUGCU--UCGUcaGCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 10873 | 0.7 | 0.768442 |
Target: 5'- gGGCGcgGGCGcccAGGCAGacCGCCUGCGGc -3' miRNA: 3'- gUCGUa-UUGC---UUCGUCa-GCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 77628 | 0.7 | 0.768442 |
Target: 5'- gGGCGagGACGgcGC-GcCGCCCGUGGa -3' miRNA: 3'- gUCGUa-UUGCuuCGuCaGCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 16782 | 0.7 | 0.777952 |
Target: 5'- aGGCcgGGCGAGGC-GUCGUacguggcggUCGCGGa -3' miRNA: 3'- gUCGuaUUGCUUCGuCAGCG---------GGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 17810 | 0.71 | 0.733237 |
Target: 5'- -cGCGgggGGCGAGGCcgccccccgccgcuaGGUCGCCCaucGCGGc -3' miRNA: 3'- guCGUa--UUGCUUCG---------------UCAGCGGG---CGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 120084 | 0.71 | 0.729245 |
Target: 5'- gAGCcgcGCGggGCGGgagauaaagCGCCCGCGc -3' miRNA: 3'- gUCGuauUGCuuCGUCa--------GCGGGCGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 26474 | 0.71 | 0.729245 |
Target: 5'- cCAGCGc-GgGGAGCGGaaacUCGUCCGCGGc -3' miRNA: 3'- -GUCGUauUgCUUCGUC----AGCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 47548 | 0.72 | 0.698904 |
Target: 5'- cCAGCAcGGCGGGcGCGGggaGCCCgGCGGc -3' miRNA: 3'- -GUCGUaUUGCUU-CGUCag-CGGG-CGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 52589 | 0.72 | 0.698904 |
Target: 5'- gCGGCGgc-CGAGGCcga-GCCCGCGGg -3' miRNA: 3'- -GUCGUauuGCUUCGucagCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 65740 | 0.72 | 0.698904 |
Target: 5'- gCGGCGcu-CGAgAGCguGGUgGCCCGCGGg -3' miRNA: 3'- -GUCGUauuGCU-UCG--UCAgCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 18974 | 0.72 | 0.698904 |
Target: 5'- cCAGCGcGGCc--GCGG-CGCCCGCGGc -3' miRNA: 3'- -GUCGUaUUGcuuCGUCaGCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 74977 | 0.72 | 0.698904 |
Target: 5'- aCAGCGacggGGCGggGCgccaggcucAGUcCGCCgGCGGg -3' miRNA: 3'- -GUCGUa---UUGCuuCG---------UCA-GCGGgCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 120714 | 0.71 | 0.709088 |
Target: 5'- cCGGCGccguCGAGGCAGUCGCgacCCGCu- -3' miRNA: 3'- -GUCGUauu-GCUUCGUCAGCG---GGCGcc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 54094 | 0.71 | 0.709088 |
Target: 5'- cCGGCAaccuaGAGGCGcUCGCCgCGCGGg -3' miRNA: 3'- -GUCGUauug-CUUCGUcAGCGG-GCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 134071 | 0.71 | 0.709088 |
Target: 5'- cCGGCGUGgacugggacGCGGAcCAGg-GCCCGCGGg -3' miRNA: 3'- -GUCGUAU---------UGCUUcGUCagCGGGCGCC- -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 14026 | 0.71 | 0.729245 |
Target: 5'- aCAGCAUA--GAGGCgcuGGUCGgCCGCGa -3' miRNA: 3'- -GUCGUAUugCUUCG---UCAGCgGGCGCc -5' |
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6497 | 3' | -54.3 | NC_001847.1 | + | 72220 | 0.7 | 0.777952 |
Target: 5'- -----cGACGAGG-AGcCGCCCGCGGg -3' miRNA: 3'- gucguaUUGCUUCgUCaGCGGGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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