miRNA display CGI


Results 101 - 120 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 78640 0.7 0.796559
Target:  5'- -uGCuuuuUGGCGgcGCGGUCGCgCGCGc -3'
miRNA:   3'- guCGu---AUUGCuuCGUCAGCGgGCGCc -5'
6497 3' -54.3 NC_001847.1 + 89537 0.7 0.796559
Target:  5'- gCGGCAgcGACGGGuCAGauUgGCCCGCGGg -3'
miRNA:   3'- -GUCGUa-UUGCUUcGUC--AgCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 126203 0.7 0.796559
Target:  5'- gGGCugggugGGCGGAGCucacuuggcggGGUCGUCgGCGGg -3'
miRNA:   3'- gUCGua----UUGCUUCG-----------UCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 43128 0.7 0.796559
Target:  5'- -cGCA-GACGgcGCGG--GCCCGCGGg -3'
miRNA:   3'- guCGUaUUGCuuCGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 106583 0.7 0.796559
Target:  5'- aGGCccu-CGcGGguGUCGCCCGCGc -3'
miRNA:   3'- gUCGuauuGCuUCguCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 99018 0.7 0.768442
Target:  5'- aCAGCGcugccucgGGCGGcgAGCAc-CGCCCGCGGa -3'
miRNA:   3'- -GUCGUa-------UUGCU--UCGUcaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 81818 0.7 0.758807
Target:  5'- aGGCG--GCGggGCGcgccgucuGUCGCCCGCc- -3'
miRNA:   3'- gUCGUauUGCuuCGU--------CAGCGGGCGcc -5'
6497 3' -54.3 NC_001847.1 + 74977 0.72 0.698904
Target:  5'- aCAGCGacggGGCGggGCgccaggcucAGUcCGCCgGCGGg -3'
miRNA:   3'- -GUCGUa---UUGCuuCG---------UCA-GCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 120714 0.71 0.709088
Target:  5'- cCGGCGccguCGAGGCAGUCGCgacCCGCu- -3'
miRNA:   3'- -GUCGUauu-GCUUCGUCAGCG---GGCGcc -5'
6497 3' -54.3 NC_001847.1 + 54094 0.71 0.709088
Target:  5'- cCGGCAaccuaGAGGCGcUCGCCgCGCGGg -3'
miRNA:   3'- -GUCGUauug-CUUCGUcAGCGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 134071 0.71 0.709088
Target:  5'- cCGGCGUGgacugggacGCGGAcCAGg-GCCCGCGGg -3'
miRNA:   3'- -GUCGUAU---------UGCUUcGUCagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 14026 0.71 0.729245
Target:  5'- aCAGCAUA--GAGGCgcuGGUCGgCCGCGa -3'
miRNA:   3'- -GUCGUAUugCUUCG---UCAGCgGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 26474 0.71 0.729245
Target:  5'- cCAGCGc-GgGGAGCGGaaacUCGUCCGCGGc -3'
miRNA:   3'- -GUCGUauUgCUUCGUC----AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 120084 0.71 0.729245
Target:  5'- gAGCcgcGCGggGCGGgagauaaagCGCCCGCGc -3'
miRNA:   3'- gUCGuauUGCuuCGUCa--------GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 17810 0.71 0.733237
Target:  5'- -cGCGgggGGCGAGGCcgccccccgccgcuaGGUCGCCCaucGCGGc -3'
miRNA:   3'- guCGUa--UUGCUUCG---------------UCAGCGGG---CGCC- -5'
6497 3' -54.3 NC_001847.1 + 69440 0.71 0.739199
Target:  5'- gCGGCgGUGGCGGacGGCGGcgCGCgCGCGGc -3'
miRNA:   3'- -GUCG-UAUUGCU--UCGUCa-GCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 3882 0.71 0.749056
Target:  5'- gCAGCucccAGCGGAGCGagccGUUGCgCGCGGu -3'
miRNA:   3'- -GUCGua--UUGCUUCGU----CAGCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 32169 0.71 0.749056
Target:  5'- aCGGCGUGcgcgGCGGAGCuuGgcgCGCgCGCGGc -3'
miRNA:   3'- -GUCGUAU----UGCUUCGu-Ca--GCGgGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 60865 0.71 0.749056
Target:  5'- gGGCGUccagcGCGggGCGGccgCGCCCG-GGa -3'
miRNA:   3'- gUCGUAu----UGCuuCGUCa--GCGGGCgCC- -5'
6497 3' -54.3 NC_001847.1 + 43442 0.7 0.757837
Target:  5'- cCGGCGUcgcgacccggggcGACGgcGCGGUCGCCgaGCGc -3'
miRNA:   3'- -GUCGUA-------------UUGCuuCGUCAGCGGg-CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.