miRNA display CGI


Results 41 - 60 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 17266 0.66 0.92924
Target:  5'- aAGCAgc-CGcAGGCccAGUCGCCgGUGGc -3'
miRNA:   3'- gUCGUauuGC-UUCG--UCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 52917 0.66 0.939341
Target:  5'- nGGCA--GCGGcuCGGggCGCCCGCGa -3'
miRNA:   3'- gUCGUauUGCUucGUCa-GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 132634 0.66 0.948463
Target:  5'- gCAGCAaagcGCGAGGCGGcC-CUCGCGa -3'
miRNA:   3'- -GUCGUau--UGCUUCGUCaGcGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 22400 0.66 0.92924
Target:  5'- gGGCcgcGGCG-AGCGuGcUCGUCCGCGGg -3'
miRNA:   3'- gUCGua-UUGCuUCGU-C-AGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 80575 0.66 0.948463
Target:  5'- cCAGCcc-GCGggGCcGUCGUccuCCGCGc -3'
miRNA:   3'- -GUCGuauUGCuuCGuCAGCG---GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 51815 0.67 0.91224
Target:  5'- cCAGCAUgucgAugGAGGCGccaagCGCCCccgugcGCGGg -3'
miRNA:   3'- -GUCGUA----UugCUUCGUca---GCGGG------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 29366 0.66 0.946716
Target:  5'- cCGGCGgcgcugcgcgcCGAGGCGGcCGCCgCGCuGGa -3'
miRNA:   3'- -GUCGUauu--------GCUUCGUCaGCGG-GCG-CC- -5'
6497 3' -54.3 NC_001847.1 + 73177 0.67 0.91224
Target:  5'- aGGCGgacgcGGCGgcGgAGUCgGCCCGCGcGg -3'
miRNA:   3'- gUCGUa----UUGCuuCgUCAG-CGGGCGC-C- -5'
6497 3' -54.3 NC_001847.1 + 97890 0.67 0.917572
Target:  5'- gCGGCGcggaUGGCGAacAGCgcgccguccgccgGGUCGUCCGCGc -3'
miRNA:   3'- -GUCGU----AUUGCU--UCG-------------UCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 58204 0.67 0.918153
Target:  5'- cCAGCA-GGCGcuccGGGCGGaUCuGCCCGcCGGg -3'
miRNA:   3'- -GUCGUaUUGC----UUCGUC-AG-CGGGC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 81192 0.67 0.923819
Target:  5'- gAGCAca--GAGGCGGcCGCCuCGCGc -3'
miRNA:   3'- gUCGUauugCUUCGUCaGCGG-GCGCc -5'
6497 3' -54.3 NC_001847.1 + 78252 0.67 0.923819
Target:  5'- -cGCcg-GCGucGCcGUCGCCgGCGGg -3'
miRNA:   3'- guCGuauUGCuuCGuCAGCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 132564 0.66 0.92924
Target:  5'- gCGGCcgcGGCGGccgcGCAGgCGCCCGCGc -3'
miRNA:   3'- -GUCGua-UUGCUu---CGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 92070 0.66 0.92924
Target:  5'- -cGCcgAGCc-AGCAG-CGCCCGCGu -3'
miRNA:   3'- guCGuaUUGcuUCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 82528 0.66 0.934413
Target:  5'- -cGCAcgcgcCGAAGUcaaAGgcgcCGCCCGCGGg -3'
miRNA:   3'- guCGUauu--GCUUCG---UCa---GCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 69682 0.66 0.934413
Target:  5'- gCAGCGUugggcGCGggGcCGGcgcUCgGUCCGCGGc -3'
miRNA:   3'- -GUCGUAu----UGCuuC-GUC---AG-CGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 31419 0.66 0.934413
Target:  5'- cCGGCGccGGCGGgcGGCGGccggCGgCCGCGGc -3'
miRNA:   3'- -GUCGUa-UUGCU--UCGUCa---GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 102746 0.66 0.939341
Target:  5'- aCGGCc-GACGggGC-GUCGUgCCGCGu -3'
miRNA:   3'- -GUCGuaUUGCuuCGuCAGCG-GGCGCc -5'
6497 3' -54.3 NC_001847.1 + 71474 0.66 0.944023
Target:  5'- gGGCAUGGCGGccgcgagcaugAGCAGaUCuUCCGCGu -3'
miRNA:   3'- gUCGUAUUGCU-----------UCGUC-AGcGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 105586 0.66 0.944023
Target:  5'- cCGGCAcGGCGuccguGCGGgggaacucgagCGCCCGCGc -3'
miRNA:   3'- -GUCGUaUUGCuu---CGUCa----------GCGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.