miRNA display CGI


Results 81 - 100 of 361 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6497 3' -54.3 NC_001847.1 + 27989 0.67 0.918153
Target:  5'- -cGCGgc-CGggGCGGaggCGgCCGCGGc -3'
miRNA:   3'- guCGUauuGCuuCGUCa--GCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 124844 0.67 0.917572
Target:  5'- gCAGCAccgccgcacugacUGGCGAGcGCGcg-GCCCGCGGu -3'
miRNA:   3'- -GUCGU-------------AUUGCUU-CGUcagCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 32876 0.67 0.91224
Target:  5'- aCGGCGgccgacGGCGAGGCcucGGggGCCgGCGGg -3'
miRNA:   3'- -GUCGUa-----UUGCUUCG---UCagCGGgCGCC- -5'
6497 3' -54.3 NC_001847.1 + 117529 0.67 0.906083
Target:  5'- gCGGCGacGACGAGGCcGUgCGCaaccccuuuCCGCGGg -3'
miRNA:   3'- -GUCGUa-UUGCUUCGuCA-GCG---------GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 21919 0.67 0.906083
Target:  5'- aGGCcgcgGGCGAGGCGGagGagaggaCCGCGGc -3'
miRNA:   3'- gUCGua--UUGCUUCGUCagCg-----GGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 55794 0.67 0.899683
Target:  5'- -cGCAUcGCGcGGCAGcUGCUCGCGa -3'
miRNA:   3'- guCGUAuUGCuUCGUCaGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 101863 0.67 0.899683
Target:  5'- gAGCAggucGCGGAGgAGcUCGCCuuugcgCGCGGa -3'
miRNA:   3'- gUCGUau--UGCUUCgUC-AGCGG------GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 55311 0.66 0.92924
Target:  5'- -----aGACGccGCGGUCGCCCacuuccggcaGCGGg -3'
miRNA:   3'- gucguaUUGCuuCGUCAGCGGG----------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 132726 0.66 0.92924
Target:  5'- aAGCuUGGCGAAGCGG-CGCa-GCGa -3'
miRNA:   3'- gUCGuAUUGCUUCGUCaGCGggCGCc -5'
6497 3' -54.3 NC_001847.1 + 54546 0.66 0.934413
Target:  5'- gGGCGggGGCGGGgaagacGCAGUcgCGCCCGUGa -3'
miRNA:   3'- gUCGUa-UUGCUU------CGUCA--GCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 123865 0.68 0.88617
Target:  5'- -cGCGUAcuugguaauucAgGAAGCccAG-CGCCCGCGGc -3'
miRNA:   3'- guCGUAU-----------UgCUUCG--UCaGCGGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 14688 0.68 0.88617
Target:  5'- aGGCAggAGCGAaaGGC-GUCGUUCGCGa -3'
miRNA:   3'- gUCGUa-UUGCU--UCGuCAGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 74674 0.68 0.879064
Target:  5'- gCGGCG--GCGccauGGCGGacgCGCCCGaCGGg -3'
miRNA:   3'- -GUCGUauUGCu---UCGUCa--GCGGGC-GCC- -5'
6497 3' -54.3 NC_001847.1 + 52117 0.68 0.87173
Target:  5'- cUAGCGgccGCGGgccGGCGG-CGCCCcaGCGGa -3'
miRNA:   3'- -GUCGUau-UGCU---UCGUCaGCGGG--CGCC- -5'
6497 3' -54.3 NC_001847.1 + 66995 0.68 0.864175
Target:  5'- gCGGCGcGGCGccggagaagGGGCAGacgcgcgcUCGCCCGCGa -3'
miRNA:   3'- -GUCGUaUUGC---------UUCGUC--------AGCGGGCGCc -5'
6497 3' -54.3 NC_001847.1 + 86482 0.66 0.945381
Target:  5'- gCGGCAcgGACGAcgaggcugcgggggcGGCGG-CGCCCcgccgccGCGGc -3'
miRNA:   3'- -GUCGUa-UUGCU---------------UCGUCaGCGGG-------CGCC- -5'
6497 3' -54.3 NC_001847.1 + 66680 0.66 0.944023
Target:  5'- -cGCGcGGCGggGCcc-CGgCCGCGGg -3'
miRNA:   3'- guCGUaUUGCuuCGucaGCgGGCGCC- -5'
6497 3' -54.3 NC_001847.1 + 58803 0.66 0.944023
Target:  5'- cCGGCGgccCGuAGGCAGUCGCUCGa-- -3'
miRNA:   3'- -GUCGUauuGC-UUCGUCAGCGGGCgcc -5'
6497 3' -54.3 NC_001847.1 + 42711 0.66 0.939341
Target:  5'- cCAGCccggauuUGGCGcGGCGGgcgGCCgCGCGGg -3'
miRNA:   3'- -GUCGu------AUUGCuUCGUCag-CGG-GCGCC- -5'
6497 3' -54.3 NC_001847.1 + 77099 0.66 0.934413
Target:  5'- gAGCu--GCGucAGCcgGGUCGCCagcaGCGGg -3'
miRNA:   3'- gUCGuauUGCu-UCG--UCAGCGGg---CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.