miRNA display CGI


Results 81 - 100 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 30259 0.66 0.529846
Target:  5'- ---gCGG-GGCGCUCGCcGCCaccgcuGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGAGCGaCGGg-----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 86991 0.66 0.529846
Target:  5'- ----gGGcCGGCGCgCGCcgGCCCgGCGGu -3'
miRNA:   3'- cagagCC-GCCGCGaGCGa-CGGG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 2760 0.66 0.53926
Target:  5'- ---gCGGCGGCGCcggCGCcggcgcccccGCCgGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGa--GCGa---------CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 69697 0.66 0.511204
Target:  5'- ----gGGcCGGCGCUCG--GUCCGCGGc -3'
miRNA:   3'- cagagCC-GCCGCGAGCgaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 81077 0.66 0.529846
Target:  5'- ----aGGCGGCGacggCGCUGgCgGCGGc -3'
miRNA:   3'- cagagCCGCCGCga--GCGACgGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 89134 0.66 0.53926
Target:  5'- --gUCGuGCGcGCGCUCG-UGCCCGUc- -3'
miRNA:   3'- cagAGC-CGC-CGCGAGCgACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 119260 0.66 0.520493
Target:  5'- ---aUGGCGGCGCcCGCgcgGCUCGUcgaGGg -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa--CGGGCG---CC- -5'
6498 5' -64.1 NC_001847.1 + 96997 0.66 0.528908
Target:  5'- cUCggGGCGGCGCgccgcgcgaagacUCGgUGCCCgGCGc -3'
miRNA:   3'- cAGagCCGCCGCG-------------AGCgACGGG-CGCc -5'
6498 5' -64.1 NC_001847.1 + 2539 0.66 0.511204
Target:  5'- ---cCGGCGGCGCUCccGCcGCCgGgcCGGg -3'
miRNA:   3'- cagaGCCGCCGCGAG--CGaCGGgC--GCC- -5'
6498 5' -64.1 NC_001847.1 + 123485 0.66 0.520493
Target:  5'- -gCUCGGCuGGgGC-CGCcGCaaGCGGg -3'
miRNA:   3'- caGAGCCG-CCgCGaGCGaCGggCGCC- -5'
6498 5' -64.1 NC_001847.1 + 53711 0.66 0.520493
Target:  5'- aGUCUgugggccggCGGCuGGCGCUgUGC-GCCUGCGa -3'
miRNA:   3'- -CAGA---------GCCG-CCGCGA-GCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 133072 0.66 0.529846
Target:  5'- ---gCGG-GGCGCUCGCcGCCaccgcuGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGAGCGaCGGg-----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 59558 0.66 0.53926
Target:  5'- ----gGGCGGCGggggCGgUGCCgGCGGa -3'
miRNA:   3'- cagagCCGCCGCga--GCgACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 107252 0.66 0.529846
Target:  5'- -cCUCGGCcucGGCGCacucCGCgacGUCCGCGu -3'
miRNA:   3'- caGAGCCG---CCGCGa---GCGa--CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 34519 0.66 0.529846
Target:  5'- ---gCGGaCGGCGCcggcgaugCGCcGCCCGcCGGg -3'
miRNA:   3'- cagaGCC-GCCGCGa-------GCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 112114 0.66 0.520493
Target:  5'- -gCUCGaGCGGCGCg---UGgCCGCGGc -3'
miRNA:   3'- caGAGC-CGCCGCGagcgACgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 112864 0.67 0.483773
Target:  5'- cGUCaCGGCcgacacGCGCgCGCUGCgCCGCGc -3'
miRNA:   3'- -CAGaGCCGc-----CGCGaGCGACG-GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 19272 0.67 0.483773
Target:  5'- ---cCGGCGGCGCagCGuCUGUgCgGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa-GC-GACGgG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 49835 0.67 0.483773
Target:  5'- --aUCGGCGaGCaGCUUGCguaUCCGCGGc -3'
miRNA:   3'- cagAGCCGC-CG-CGAGCGac-GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 60801 0.67 0.487391
Target:  5'- -cCUUGGUGGCGCcCGCcagacacacUgauggcgcgaggggcGCCCGCGGc -3'
miRNA:   3'- caGAGCCGCCGCGaGCG---------A---------------CGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.