miRNA display CGI


Results 101 - 120 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 66800 0.67 0.447476
Target:  5'- cGUCUgGGCgucgguaGGCGgggCGCUGgUCGCGGg -3'
miRNA:   3'- -CAGAgCCG-------CCGCga-GCGACgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 33685 0.67 0.483773
Target:  5'- -gCUagaGGCgcaGGCGCUCGCgGCgCgGCGGc -3'
miRNA:   3'- caGAg--CCG---CCGCGAGCGaCG-GgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 106777 0.67 0.469434
Target:  5'- cGUCUcCGGCgcgagGGCGCcgggggcccgggcgCGCgGcCCCGCGGg -3'
miRNA:   3'- -CAGA-GCCG-----CCGCGa-------------GCGaC-GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 50981 0.67 0.492841
Target:  5'- --gUCGGCGGCGCa-GCUcgaGCgCGCGa -3'
miRNA:   3'- cagAGCCGCCGCGagCGA---CGgGCGCc -5'
6498 5' -64.1 NC_001847.1 + 73787 0.67 0.448344
Target:  5'- -cCUCGcCGGUGCgggGCUGCCUGCcGGu -3'
miRNA:   3'- caGAGCcGCCGCGag-CGACGGGCG-CC- -5'
6498 5' -64.1 NC_001847.1 + 40108 0.67 0.474786
Target:  5'- -cCUCGGUugguaGGUGCg-GCUGCgCGUGGg -3'
miRNA:   3'- caGAGCCG-----CCGCGagCGACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 124428 0.67 0.474786
Target:  5'- -aCUCgcuGGCGGCGCUUG--GCCggCGCGGg -3'
miRNA:   3'- caGAG---CCGCCGCGAGCgaCGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 30251 0.67 0.483773
Target:  5'- uGUCgcuGGCGGCGUUgcaGC-GCgCCGCGGc -3'
miRNA:   3'- -CAGag-CCGCCGCGAg--CGaCG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 112864 0.67 0.483773
Target:  5'- cGUCaCGGCcgacacGCGCgCGCUGCgCCGCGc -3'
miRNA:   3'- -CAGaGCCGc-----CGCGaGCGACG-GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 19272 0.67 0.483773
Target:  5'- ---cCGGCGGCGCagCGuCUGUgCgGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa-GC-GACGgG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 49835 0.67 0.483773
Target:  5'- --aUCGGCGaGCaGCUUGCguaUCCGCGGc -3'
miRNA:   3'- cagAGCCGC-CG-CGAGCGac-GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 2630 0.67 0.457068
Target:  5'- -cUUCGGCGGgacCGCcgUCGCcGCuuGCGGc -3'
miRNA:   3'- caGAGCCGCC---GCG--AGCGaCGggCGCC- -5'
6498 5' -64.1 NC_001847.1 + 43367 0.67 0.457068
Target:  5'- cGUCcgCGGCcaGCGC-CGCcgacggagcGCCCGCGGa -3'
miRNA:   3'- -CAGa-GCCGc-CGCGaGCGa--------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 1064 0.67 0.457068
Target:  5'- ---gCGGCGGCGCcgggcuguUCGCUGCuccCCGCc- -3'
miRNA:   3'- cagaGCCGCCGCG--------AGCGACG---GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 103306 0.67 0.457068
Target:  5'- ---gCGGCGGgGCggccgCGCgccaaccccccUGUCCGCGGa -3'
miRNA:   3'- cagaGCCGCCgCGa----GCG-----------ACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 64012 0.67 0.457068
Target:  5'- cUCUacccgGGCGGCGggaCggGCuUGCCCGCGGu -3'
miRNA:   3'- cAGAg----CCGCCGC---GagCG-ACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 20862 0.67 0.457068
Target:  5'- aGUCUgcgcugCGGCGGCGCUCuuuauacuggGCggacGCCCccgcaGCGGc -3'
miRNA:   3'- -CAGA------GCCGCCGCGAG----------CGa---CGGG-----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 60801 0.67 0.487391
Target:  5'- -cCUUGGUGGCGCcCGCcagacacacUgauggcgcgaggggcGCCCGCGGc -3'
miRNA:   3'- caGAGCCGCCGCGaGCG---------A---------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 121613 0.67 0.448344
Target:  5'- ---cCGGCGGCGgUUGCUG-CCGCu- -3'
miRNA:   3'- cagaGCCGCCGCgAGCGACgGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 68154 0.67 0.448344
Target:  5'- uUCUcCGGCGccGCGC-CGCaGCCCGCc- -3'
miRNA:   3'- cAGA-GCCGC--CGCGaGCGaCGGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.