Results 121 - 140 of 420 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 64012 | 0.67 | 0.457068 |
Target: 5'- cUCUacccgGGCGGCGggaCggGCuUGCCCGCGGu -3' miRNA: 3'- cAGAg----CCGCCGC---GagCG-ACGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 20862 | 0.67 | 0.457068 |
Target: 5'- aGUCUgcgcugCGGCGGCGCUCuuuauacuggGCggacGCCCccgcaGCGGc -3' miRNA: 3'- -CAGA------GCCGCCGCGAG----------CGa---CGGG-----CGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 103306 | 0.67 | 0.457068 |
Target: 5'- ---gCGGCGGgGCggccgCGCgccaaccccccUGUCCGCGGa -3' miRNA: 3'- cagaGCCGCCgCGa----GCG-----------ACGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 56804 | 0.67 | 0.465884 |
Target: 5'- -gUUCGccgccGCGGCGCccaaGCcggGCCCGCGGc -3' miRNA: 3'- caGAGC-----CGCCGCGag--CGa--CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 78588 | 0.67 | 0.465884 |
Target: 5'- aUCacgCGGCcGCGCUCccuggaGCUGCCgcCGCGGc -3' miRNA: 3'- cAGa--GCCGcCGCGAG------CGACGG--GCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 121613 | 0.67 | 0.448344 |
Target: 5'- ---cCGGCGGCGgUUGCUG-CCGCu- -3' miRNA: 3'- cagaGCCGCCGCgAGCGACgGGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 130488 | 0.67 | 0.49649 |
Target: 5'- -gCUCGacGCGGCGCgucgggcugaggcgCGCgagcGCCgGCGGg -3' miRNA: 3'- caGAGC--CGCCGCGa-------------GCGa---CGGgCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 61266 | 0.67 | 0.492841 |
Target: 5'- cGUCcgCGGCGcGCGCgggCGCcGCgCCGCc- -3' miRNA: 3'- -CAGa-GCCGC-CGCGa--GCGaCG-GGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 6901 | 0.67 | 0.492841 |
Target: 5'- --gUCGGCGaGCGCgcgCGC-GCCCuGCGc -3' miRNA: 3'- cagAGCCGC-CGCGa--GCGaCGGG-CGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 77073 | 0.67 | 0.492841 |
Target: 5'- -gCUgCGGCGcGCGCgcgCGCcaaucggcgGCCCGCGc -3' miRNA: 3'- caGA-GCCGC-CGCGa--GCGa--------CGGGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 51541 | 0.67 | 0.492841 |
Target: 5'- uGUCggaGGCuGCGCgcgCGCgcgugcucggGCUCGCGGg -3' miRNA: 3'- -CAGag-CCGcCGCGa--GCGa---------CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 50981 | 0.67 | 0.492841 |
Target: 5'- --gUCGGCGGCGCa-GCUcgaGCgCGCGa -3' miRNA: 3'- cagAGCCGCCGCGagCGA---CGgGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 6754 | 0.67 | 0.491931 |
Target: 5'- cGUCUgCGGUgcggccggugcgaGGCGC-CaGCUGCuCCGUGGc -3' miRNA: 3'- -CAGA-GCCG-------------CCGCGaG-CGACG-GGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 60801 | 0.67 | 0.487391 |
Target: 5'- -cCUUGGUGGCGCcCGCcagacacacUgauggcgcgaggggcGCCCGCGGc -3' miRNA: 3'- caGAGCCGCCGCGaGCG---------A---------------CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 49835 | 0.67 | 0.483773 |
Target: 5'- --aUCGGCGaGCaGCUUGCguaUCCGCGGc -3' miRNA: 3'- cagAGCCGC-CG-CGAGCGac-GGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 19272 | 0.67 | 0.483773 |
Target: 5'- ---cCGGCGGCGCagCGuCUGUgCgGCGGg -3' miRNA: 3'- cagaGCCGCCGCGa-GC-GACGgG-CGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 112864 | 0.67 | 0.483773 |
Target: 5'- cGUCaCGGCcgacacGCGCgCGCUGCgCCGCGc -3' miRNA: 3'- -CAGaGCCGc-----CGCGaGCGACG-GGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 33685 | 0.67 | 0.483773 |
Target: 5'- -gCUagaGGCgcaGGCGCUCGCgGCgCgGCGGc -3' miRNA: 3'- caGAg--CCG---CCGCGAGCGaCG-GgCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 30251 | 0.67 | 0.483773 |
Target: 5'- uGUCgcuGGCGGCGUUgcaGC-GCgCCGCGGc -3' miRNA: 3'- -CAGag-CCGCCGCGAg--CGaCG-GGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 47792 | 0.67 | 0.454441 |
Target: 5'- --gUCGGCcucGGCGCcCGCgaucggcuccagguUGUCCGCGGu -3' miRNA: 3'- cagAGCCG---CCGCGaGCG--------------ACGGGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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