miRNA display CGI


Results 61 - 80 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 28553 0.72 0.252666
Target:  5'- -cUUCGGCGGCGCggGCgacaCCCGCGa -3'
miRNA:   3'- caGAGCCGCCGCGagCGac--GGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 73869 0.72 0.252666
Target:  5'- ---gCGGCGGCGCggcgcccgCGC-GCgCCGCGGa -3'
miRNA:   3'- cagaGCCGCCGCGa-------GCGaCG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 105763 0.72 0.235878
Target:  5'- -cCUCGcgcGCGGCaGCUCcgGCcGCCCGCGGu -3'
miRNA:   3'- caGAGC---CGCCG-CGAG--CGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 18387 0.72 0.235878
Target:  5'- -cCUCGGCGuC-CUCGCccugcggGCCCGCGGg -3'
miRNA:   3'- caGAGCCGCcGcGAGCGa------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 131366 0.72 0.252666
Target:  5'- -cUUCGGCGGCGCggGCgacaCCCGCGa -3'
miRNA:   3'- caGAGCCGCCGCGagCGac--GGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 65241 0.72 0.235878
Target:  5'- ----gGGCGGCGCUuuucCGCcacccggGCCCGCGGc -3'
miRNA:   3'- cagagCCGCCGCGA----GCGa------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 98787 0.72 0.230493
Target:  5'- ---gCGGCGGCGC-CGCguggcGCgCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa----CG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 28691 0.72 0.254977
Target:  5'- --aUCGGCGGCGCUgGCcuaccgggaccccuuUGUgCGCGGc -3'
miRNA:   3'- cagAGCCGCCGCGAgCG---------------ACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 37768 0.72 0.252666
Target:  5'- uUCUCGGaGG-GCUCGCgccugaucaugUGCCUGCGGc -3'
miRNA:   3'- cAGAGCCgCCgCGAGCG-----------ACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 99027 0.72 0.246963
Target:  5'- -cCUCgGGCGGCGa--GCaccGCCCGCGGa -3'
miRNA:   3'- caGAG-CCGCCGCgagCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 91603 0.72 0.241367
Target:  5'- cUCgCGGCGGCGCUUcuccucgcgGCUGCggCUGCGGc -3'
miRNA:   3'- cAGaGCCGCCGCGAG---------CGACG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 18648 0.72 0.241367
Target:  5'- -gCUCGGCGaGCGCgaCGCcgUGCCCGCc- -3'
miRNA:   3'- caGAGCCGC-CGCGa-GCG--ACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 30334 0.72 0.235878
Target:  5'- ---gUGGUGGUGCUcuacgaccCGCUGCCCGgGGa -3'
miRNA:   3'- cagaGCCGCCGCGA--------GCGACGGGCgCC- -5'
6498 5' -64.1 NC_001847.1 + 133147 0.72 0.235878
Target:  5'- ---gUGGUGGUGCUcuacgaccCGCUGCCCGgGGa -3'
miRNA:   3'- cagaGCCGCCGCGA--------GCGACGGGCgCC- -5'
6498 5' -64.1 NC_001847.1 + 83010 0.72 0.240814
Target:  5'- cUCgUCGGUccgcuggGGCGC-CGCcgGCCCGCGGc -3'
miRNA:   3'- cAG-AGCCG-------CCGCGaGCGa-CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 31573 0.72 0.22469
Target:  5'- ---cCGGCGGCGggccggcCUCGCccuagggggGCCCGCGGg -3'
miRNA:   3'- cagaGCCGCCGC-------GAGCGa--------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 15566 0.71 0.258477
Target:  5'- cGUCgggCcGCGGcCGC-CGCUGCCCGCa- -3'
miRNA:   3'- -CAGa--GcCGCC-GCGaGCGACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 29497 0.71 0.282815
Target:  5'- cUCUCcggccgcgGGCGGCGCUUcggccgcagaGCUcGCCCGCGcGg -3'
miRNA:   3'- cAGAG--------CCGCCGCGAG----------CGA-CGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 129403 0.71 0.282815
Target:  5'- -gCUUGGCGGCGaacCGC--CCCGCGGg -3'
miRNA:   3'- caGAGCCGCCGCga-GCGacGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 101354 0.71 0.276565
Target:  5'- -gCUCGgggcugcauGCGcGCGCUUgcgccgcggggGCUGCCCGCGGc -3'
miRNA:   3'- caGAGC---------CGC-CGCGAG-----------CGACGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.