Results 61 - 80 of 420 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 105763 | 0.72 | 0.235878 |
Target: 5'- -cCUCGcgcGCGGCaGCUCcgGCcGCCCGCGGu -3' miRNA: 3'- caGAGC---CGCCG-CGAG--CGaCGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 34105 | 0.72 | 0.235878 |
Target: 5'- -gCUCGcGCGGCGg-CGgaGCCUGCGGc -3' miRNA: 3'- caGAGC-CGCCGCgaGCgaCGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 65241 | 0.72 | 0.235878 |
Target: 5'- ----gGGCGGCGCUuuucCGCcacccggGCCCGCGGc -3' miRNA: 3'- cagagCCGCCGCGA----GCGa------CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 133147 | 0.72 | 0.235878 |
Target: 5'- ---gUGGUGGUGCUcuacgaccCGCUGCCCGgGGa -3' miRNA: 3'- cagaGCCGCCGCGA--------GCGACGGGCgCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 30334 | 0.72 | 0.235878 |
Target: 5'- ---gUGGUGGUGCUcuacgaccCGCUGCCCGgGGa -3' miRNA: 3'- cagaGCCGCCGCGA--------GCGACGGGCgCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 18387 | 0.72 | 0.235878 |
Target: 5'- -cCUCGGCGuC-CUCGCccugcggGCCCGCGGg -3' miRNA: 3'- caGAGCCGCcGcGAGCGa------CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 83010 | 0.72 | 0.240814 |
Target: 5'- cUCgUCGGUccgcuggGGCGC-CGCcgGCCCGCGGc -3' miRNA: 3'- cAG-AGCCG-------CCGCGaGCGa-CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 91603 | 0.72 | 0.241367 |
Target: 5'- cUCgCGGCGGCGCUUcuccucgcgGCUGCggCUGCGGc -3' miRNA: 3'- cAGaGCCGCCGCGAG---------CGACG--GGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 18648 | 0.72 | 0.241367 |
Target: 5'- -gCUCGGCGaGCGCgaCGCcgUGCCCGCc- -3' miRNA: 3'- caGAGCCGC-CGCGa-GCG--ACGGGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 99027 | 0.72 | 0.246963 |
Target: 5'- -cCUCgGGCGGCGa--GCaccGCCCGCGGa -3' miRNA: 3'- caGAG-CCGCCGCgagCGa--CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 28553 | 0.72 | 0.252666 |
Target: 5'- -cUUCGGCGGCGCggGCgacaCCCGCGa -3' miRNA: 3'- caGAGCCGCCGCGagCGac--GGGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 73869 | 0.72 | 0.252666 |
Target: 5'- ---gCGGCGGCGCggcgcccgCGC-GCgCCGCGGa -3' miRNA: 3'- cagaGCCGCCGCGa-------GCGaCG-GGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 129942 | 0.72 | 0.252666 |
Target: 5'- cGUCgCGGC-GCGCUUGCcgcGCUCGCGGc -3' miRNA: 3'- -CAGaGCCGcCGCGAGCGa--CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 131366 | 0.72 | 0.252666 |
Target: 5'- -cUUCGGCGGCGCggGCgacaCCCGCGa -3' miRNA: 3'- caGAGCCGCCGCGagCGac--GGGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 37768 | 0.72 | 0.252666 |
Target: 5'- uUCUCGGaGG-GCUCGCgccugaucaugUGCCUGCGGc -3' miRNA: 3'- cAGAGCCgCCgCGAGCG-----------ACGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 28691 | 0.72 | 0.254977 |
Target: 5'- --aUCGGCGGCGCUgGCcuaccgggaccccuuUGUgCGCGGc -3' miRNA: 3'- cagAGCCGCCGCGAgCG---------------ACGgGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 26992 | 0.71 | 0.258477 |
Target: 5'- cGUCUgCGGCGGCGCg-GUUGCCguacucgGCGGc -3' miRNA: 3'- -CAGA-GCCGCCGCGagCGACGGg------CGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 14306 | 0.71 | 0.258477 |
Target: 5'- cGUCgCGGCccCGCUccCGCUGCUCGCGGu -3' miRNA: 3'- -CAGaGCCGccGCGA--GCGACGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 15566 | 0.71 | 0.258477 |
Target: 5'- cGUCgggCcGCGGcCGC-CGCUGCCCGCa- -3' miRNA: 3'- -CAGa--GcCGCC-GCGaGCGACGGGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 33760 | 0.71 | 0.264397 |
Target: 5'- ---cCGGCGGCGC-CGCgggcagccCCCGCGGc -3' miRNA: 3'- cagaGCCGCCGCGaGCGac------GGGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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