miRNA display CGI


Results 81 - 100 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 61885 0.71 0.268001
Target:  5'- -aCUCGGCGuGCGCgcacggccucgagCGC-GCCCGCGc -3'
miRNA:   3'- caGAGCCGC-CGCGa------------GCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 2405 0.71 0.270426
Target:  5'- -gCUCGGCcGUgGCUCGCUGCgCCGCu- -3'
miRNA:   3'- caGAGCCGcCG-CGAGCGACG-GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 98162 0.71 0.270426
Target:  5'- -gCUCGGCGcgggccCGCUCGCcggcGCCCGCGc -3'
miRNA:   3'- caGAGCCGCc-----GCGAGCGa---CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 61940 0.71 0.270426
Target:  5'- cGUCagCGGCGGCGCg----GCCCGCGcGg -3'
miRNA:   3'- -CAGa-GCCGCCGCGagcgaCGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 67179 0.71 0.270426
Target:  5'- cUCUCGGCGGCGaCcCcCUGCC-GCGGc -3'
miRNA:   3'- cAGAGCCGCCGC-GaGcGACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 44290 0.71 0.270426
Target:  5'- ---cCGGCGGCGCggCGCgGCgCgGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa-GCGaCG-GgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 120116 0.71 0.270426
Target:  5'- cUCgccCGGCGGCcgcgGCUCGCgcgGCCCcaccGCGGc -3'
miRNA:   3'- cAGa--GCCGCCG----CGAGCGa--CGGG----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 101354 0.71 0.276565
Target:  5'- -gCUCGgggcugcauGCGcGCGCUUgcgccgcggggGCUGCCCGCGGc -3'
miRNA:   3'- caGAGC---------CGC-CGCGAG-----------CGACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 54690 0.71 0.276565
Target:  5'- ---aCGGCGGCgGCg-GC-GCCCGCGGg -3'
miRNA:   3'- cagaGCCGCCG-CGagCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 129403 0.71 0.282815
Target:  5'- -gCUUGGCGGCGaacCGC--CCCGCGGg -3'
miRNA:   3'- caGAGCCGCCGCga-GCGacGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29497 0.71 0.282815
Target:  5'- cUCUCcggccgcgGGCGGCGCUUcggccgcagaGCUcGCCCGCGcGg -3'
miRNA:   3'- cAGAG--------CCGCCGCGAG----------CGA-CGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 82834 0.71 0.282815
Target:  5'- uUCcCGGuUGGCGC-CGCccgcGCCCGCGGu -3'
miRNA:   3'- cAGaGCC-GCCGCGaGCGa---CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 26590 0.71 0.282815
Target:  5'- -gCUUGGCGGCGaacCGC--CCCGCGGg -3'
miRNA:   3'- caGAGCCGCCGCga-GCGacGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 97879 0.71 0.283446
Target:  5'- cGUCccagUCGGCGGCGCggauggcgaacagcgCGCcGUCCGcCGGg -3'
miRNA:   3'- -CAG----AGCCGCCGCGa--------------GCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 49172 0.71 0.284712
Target:  5'- cGUCUgccgaccauggacgCGGCGGCcaagacgguagccCUCGCgccgggGCCCGCGGg -3'
miRNA:   3'- -CAGA--------------GCCGCCGc------------GAGCGa-----CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 131306 0.71 0.289176
Target:  5'- cGUCUgGgGCGGCGCgaacaaCGCcacGCUCGCGGc -3'
miRNA:   3'- -CAGAgC-CGCCGCGa-----GCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 106221 0.71 0.289176
Target:  5'- gGUCUgGcGUGGCGCUCGCcUGCaCgGCGu -3'
miRNA:   3'- -CAGAgC-CGCCGCGAGCG-ACG-GgCGCc -5'
6498 5' -64.1 NC_001847.1 + 96167 0.7 0.293695
Target:  5'- cGUCUacuaagccccgccgCGGCcgccgccauGGCGCUCGCgGCCCcCGGg -3'
miRNA:   3'- -CAGA--------------GCCG---------CCGCGAGCGaCGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 3964 0.7 0.293695
Target:  5'- cGUCUcCGGCGGCGagggcgccgggggcCgggCGCgcgGcCCCGCGGg -3'
miRNA:   3'- -CAGA-GCCGCCGC--------------Ga--GCGa--C-GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 91779 0.7 0.294997
Target:  5'- --gUCGGCGGCGCUggccgcggaCGCUucgucggcgucgcGCCgCGCGGc -3'
miRNA:   3'- cagAGCCGCCGCGA---------GCGA-------------CGG-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.