miRNA display CGI


Results 101 - 120 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 75856 0.7 0.295649
Target:  5'- gGUCUCGGCGGUGU----UGCgCGCGGc -3'
miRNA:   3'- -CAGAGCCGCCGCGagcgACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29285 0.7 0.295649
Target:  5'- -aUUCGcGCGGCGCUgGCgGCagaggCCGCGGc -3'
miRNA:   3'- caGAGC-CGCCGCGAgCGaCG-----GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 104359 0.7 0.295649
Target:  5'- ---gCGGCGGCGUcCGC-GCCCGCa- -3'
miRNA:   3'- cagaGCCGCCGCGaGCGaCGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 59734 0.7 0.295649
Target:  5'- -gCUCGGCguccGGCGCgagcucgacUCGCUGgCCGCGu -3'
miRNA:   3'- caGAGCCG----CCGCG---------AGCGACgGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 132549 0.7 0.295649
Target:  5'- ---gCGGCGG-GCUCGCgUGCggCCGCGGc -3'
miRNA:   3'- cagaGCCGCCgCGAGCG-ACG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 107040 0.7 0.295649
Target:  5'- --aUCGGCGGUGUcgCGCgcgGCCC-CGGg -3'
miRNA:   3'- cagAGCCGCCGCGa-GCGa--CGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 16846 0.7 0.295649
Target:  5'- aUCggGGCGGCGCUCGagGCgaGCGGg -3'
miRNA:   3'- cAGagCCGCCGCGAGCgaCGggCGCC- -5'
6498 5' -64.1 NC_001847.1 + 114942 0.7 0.295649
Target:  5'- -gUUUGGCGGgGCggggCGCcGCCCcGCGGu -3'
miRNA:   3'- caGAGCCGCCgCGa---GCGaCGGG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 59346 0.7 0.300908
Target:  5'- ---gCGGCGGCGaggUCGCgcgccgcgccgaGCCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCg--AGCGa-----------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 17310 0.7 0.302235
Target:  5'- -aCUCGGCGGCGCggcacacggcCGCguaGCCgGCGc -3'
miRNA:   3'- caGAGCCGCCGCGa---------GCGa--CGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 116403 0.7 0.302235
Target:  5'- ---gCGGCGGCGCUCuggGCCC-CGGg -3'
miRNA:   3'- cagaGCCGCCGCGAGcgaCGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 34009 0.7 0.3049
Target:  5'- uUCgCGGCGGUGCUgggcaccgCGCUGggccaggcgaugggcCCCGCGGc -3'
miRNA:   3'- cAGaGCCGCCGCGA--------GCGAC---------------GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 77508 0.7 0.308932
Target:  5'- --gUCGGUGGCcggggaGCUCGCgcgUGCCUGCGa -3'
miRNA:   3'- cagAGCCGCCG------CGAGCG---ACGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 118430 0.7 0.308932
Target:  5'- gGUCUCGGCgccguGGgGCUC-CUGCUgGUGGc -3'
miRNA:   3'- -CAGAGCCG-----CCgCGAGcGACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 20083 0.7 0.308932
Target:  5'- -gCUCccGCGGCGCggcccggccaUCGCUaGCCCGUGGc -3'
miRNA:   3'- caGAGc-CGCCGCG----------AGCGA-CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 60432 0.7 0.315056
Target:  5'- -gCUCGGCGuccacgcGCGCgucggCGCUGCCCccguCGGg -3'
miRNA:   3'- caGAGCCGC-------CGCGa----GCGACGGGc---GCC- -5'
6498 5' -64.1 NC_001847.1 + 115913 0.7 0.315742
Target:  5'- -gCUCGcGCaGGCGCUgGCUGUCgcaGCGGc -3'
miRNA:   3'- caGAGC-CG-CCGCGAgCGACGGg--CGCC- -5'
6498 5' -64.1 NC_001847.1 + 102846 0.7 0.322665
Target:  5'- uUCcgCGGCGGCG-UCGCggggccgcGCCaCGCGGa -3'
miRNA:   3'- cAGa-GCCGCCGCgAGCGa-------CGG-GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 55741 0.7 0.322665
Target:  5'- ---aCGGUGGUccgGCUCGC-GCCCGCGcGg -3'
miRNA:   3'- cagaGCCGCCG---CGAGCGaCGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 21967 0.7 0.322665
Target:  5'- -gCUgGGCcgcGGCGCcggUUGCcGCCCGCGGu -3'
miRNA:   3'- caGAgCCG---CCGCG---AGCGaCGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.