miRNA display CGI


Results 121 - 140 of 420 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 119364 0.7 0.322665
Target:  5'- ---cCGcGCGGCGCUUGCcGCCgGCGa -3'
miRNA:   3'- cagaGC-CGCCGCGAGCGaCGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 102846 0.7 0.322665
Target:  5'- uUCcgCGGCGGCG-UCGCggggccgcGCCaCGCGGa -3'
miRNA:   3'- cAGa-GCCGCCGCgAGCGa-------CGG-GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 123178 0.7 0.328993
Target:  5'- ---gCGGCGGCGCUCagGCcGCCCaucccuaGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGAG--CGaCGGG-------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 103811 0.7 0.328993
Target:  5'- ---cCGGCGGCgGCacgCGCUccaccaggccgccGCCCGCGGc -3'
miRNA:   3'- cagaGCCGCCG-CGa--GCGA-------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 18208 0.7 0.328993
Target:  5'- gGUCUCGGgcuggcggucucuCGGCGgUCG-UGCgCGCGGg -3'
miRNA:   3'- -CAGAGCC-------------GCCGCgAGCgACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 3871 0.7 0.329701
Target:  5'- cUCcagCGGCGGCgGCccgUCGCgcgGCgCCGCGGc -3'
miRNA:   3'- cAGa--GCCGCCG-CG---AGCGa--CG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 106684 0.7 0.329701
Target:  5'- cUCcagCGGCGGCgGCccgUCGCgcgGCgCCGCGGc -3'
miRNA:   3'- cAGa--GCCGCCG-CG---AGCGa--CG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 94217 0.7 0.329701
Target:  5'- ---gCGGCGGaGCUCGCggcggggcGCCCGCGcGg -3'
miRNA:   3'- cagaGCCGCCgCGAGCGa-------CGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 121718 0.7 0.330411
Target:  5'- gGUCUucaCGGCGcGCGCUggcgCGCccgucuuucucccggGCCCGCGGc -3'
miRNA:   3'- -CAGA---GCCGC-CGCGA----GCGa--------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 109949 0.7 0.332547
Target:  5'- gGUCUUgcccccuccccuucgGGCGugucGCGCUCGCUcGCCCggGCGGu -3'
miRNA:   3'- -CAGAG---------------CCGC----CGCGAGCGA-CGGG--CGCC- -5'
6498 5' -64.1 NC_001847.1 + 7136 0.7 0.332547
Target:  5'- gGUCUUgcccccuccccuucgGGCGugucGCGCUCGCUcGCCCggGCGGu -3'
miRNA:   3'- -CAGAG---------------CCGC----CGCGAGCGA-CGGG--CGCC- -5'
6498 5' -64.1 NC_001847.1 + 998 0.7 0.33613
Target:  5'- ---gCGGCGGCgGCacgCGCUccaccaggccgccGCCCGCGGc -3'
miRNA:   3'- cagaGCCGCCG-CGa--GCGA-------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 60735 0.7 0.33685
Target:  5'- --gUCGGCGGCccgcGCgcgCGCggcgGCCgCGCGGu -3'
miRNA:   3'- cagAGCCGCCG----CGa--GCGa---CGG-GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29448 0.69 0.34411
Target:  5'- -aCUCGacgcGCGGCGCg-GCgGCCCGCGc -3'
miRNA:   3'- caGAGC----CGCCGCGagCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 4613 0.69 0.34411
Target:  5'- -gCUCGGCcagcucGGCGCggGCgGCCCGcCGGc -3'
miRNA:   3'- caGAGCCG------CCGCGagCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 29537 0.69 0.34411
Target:  5'- ---gCGGCcGCGCUCGCgGCCCuggaggccgccgGCGGg -3'
miRNA:   3'- cagaGCCGcCGCGAGCGaCGGG------------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 114245 0.69 0.34411
Target:  5'- -gCUCGcccGCGacGCGCUCGCUGCCCaGCc- -3'
miRNA:   3'- caGAGC---CGC--CGCGAGCGACGGG-CGcc -5'
6498 5' -64.1 NC_001847.1 + 35675 0.69 0.34411
Target:  5'- cGUCgugaCGcaaGCGGCGCU-GCUGCUgGCGGc -3'
miRNA:   3'- -CAGa---GC---CGCCGCGAgCGACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 31230 0.69 0.34411
Target:  5'- ---gCGGCGGCGC-CGCccgcGgCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa---CgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 66056 0.69 0.34411
Target:  5'- cGUCggCGGCGGCGC-CGgggGCgaCGCGGg -3'
miRNA:   3'- -CAGa-GCCGCCGCGaGCga-CGg-GCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.