miRNA display CGI


Results 141 - 160 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 107426 0.69 0.34411
Target:  5'- -gCUCGGCcagcucGGCGCggGCgGCCCGcCGGc -3'
miRNA:   3'- caGAGCCG------CCGCGagCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 132261 0.69 0.34411
Target:  5'- -aCUCGacgcGCGGCGCg-GCgGCCCGCGc -3'
miRNA:   3'- caGAGC----CGCCGCGagCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 29448 0.69 0.34411
Target:  5'- -aCUCGacgcGCGGCGCg-GCgGCCCGCGc -3'
miRNA:   3'- caGAGC----CGCCGCGagCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 4613 0.69 0.34411
Target:  5'- -gCUCGGCcagcucGGCGCggGCgGCCCGcCGGc -3'
miRNA:   3'- caGAGCCG------CCGCGagCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 77609 0.69 0.349259
Target:  5'- cGUUUCuGGCGGCGCcgcUgggcgaggacggcgCGCcGCCCGUGGa -3'
miRNA:   3'- -CAGAG-CCGCCGCG---A--------------GCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 18957 0.69 0.35074
Target:  5'- cGUCcgggCGGCGacgaccaGCGCggcCGCggcGCCCGCGGc -3'
miRNA:   3'- -CAGa---GCCGC-------CGCGa--GCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 2076 0.69 0.351482
Target:  5'- gGUggCGGCGaGCGCccCGCgggGCCCGCGcGg -3'
miRNA:   3'- -CAgaGCCGC-CGCGa-GCGa--CGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 125470 0.69 0.351482
Target:  5'- --gUCGGCGGCaGCUCGCgGCgggCGCGa -3'
miRNA:   3'- cagAGCCGCCG-CGAGCGaCGg--GCGCc -5'
6498 5' -64.1 NC_001847.1 + 105637 0.69 0.351482
Target:  5'- -gCUCuGCGGC-CgaagCGCcGCCCGCGGc -3'
miRNA:   3'- caGAGcCGCCGcGa---GCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29997 0.69 0.351482
Target:  5'- ---gCGGCGGgagcCGC-CGCUGCCCGCc- -3'
miRNA:   3'- cagaGCCGCC----GCGaGCGACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 104889 0.69 0.351482
Target:  5'- gGUggCGGCGaGCGCccCGCgggGCCCGCGcGg -3'
miRNA:   3'- -CAgaGCCGC-CGCGa-GCGa--CGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 119147 0.69 0.351482
Target:  5'- -gCUCGuCGGCGC-CGCgGCcgCCGCGGg -3'
miRNA:   3'- caGAGCcGCCGCGaGCGaCG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 132810 0.69 0.351482
Target:  5'- ---gCGGCGGgagcCGC-CGCUGCCCGCc- -3'
miRNA:   3'- cagaGCCGCC----GCGaGCGACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 119207 0.69 0.351482
Target:  5'- -gCUCGuCGGCGC-CGCgGCcaCCGCGGg -3'
miRNA:   3'- caGAGCcGCCGCGaGCGaCG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 130250 0.69 0.358966
Target:  5'- uGUCguucgCaGCGGCGCgggggcccugcCGCUGCCCGCc- -3'
miRNA:   3'- -CAGa----GcCGCCGCGa----------GCGACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 134751 0.69 0.358966
Target:  5'- gGUCUCGGuCGgaGCGCgguccggCGCgcgGCgCGCGGg -3'
miRNA:   3'- -CAGAGCC-GC--CGCGa------GCGa--CGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 132662 0.69 0.358966
Target:  5'- cGUCUucacacggcggCGGgGGCGC-CGCcGCCCGCu- -3'
miRNA:   3'- -CAGA-----------GCCgCCGCGaGCGaCGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 87272 0.69 0.358966
Target:  5'- uUCUC-GCGGaCGUgcgCGCcgacgGCCCGCGGc -3'
miRNA:   3'- cAGAGcCGCC-GCGa--GCGa----CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 31938 0.69 0.358966
Target:  5'- gGUCUCGGuCGgaGCGCgguccggCGCgcgGCgCGCGGg -3'
miRNA:   3'- -CAGAGCC-GC--CGCGa------GCGa--CGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 27437 0.69 0.358966
Target:  5'- uGUCguucgCaGCGGCGCgggggcccugcCGCUGCCCGCc- -3'
miRNA:   3'- -CAGa----GcCGCCGCGa----------GCGACGGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.