miRNA display CGI


Results 81 - 100 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 133892 0.66 0.505665
Target:  5'- -gCUCGGCGcGcCGCU-GCggccgguguaccugGCCUGCGGg -3'
miRNA:   3'- caGAGCCGC-C-GCGAgCGa-------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 30950 0.66 0.501986
Target:  5'- ---cCGGCaGCGCgUGCUGCCgGCGc -3'
miRNA:   3'- cagaGCCGcCGCGaGCGACGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 115779 0.66 0.501986
Target:  5'- -gCUCGGCcagaGCGUUCGCggaGCCgcUGCGGc -3'
miRNA:   3'- caGAGCCGc---CGCGAGCGa--CGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 34281 0.66 0.501986
Target:  5'- ---gCGGCugGGCGC-CGC-GCUCGCGGc -3'
miRNA:   3'- cagaGCCG--CCGCGaGCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 124862 0.66 0.501986
Target:  5'- ---cUGGCGaGCGC--GCgGCCCGCGGu -3'
miRNA:   3'- cagaGCCGC-CGCGagCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 91570 0.66 0.501986
Target:  5'- ---cUGG-GGCGCgCGUcGCCCGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGaGCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 73768 0.66 0.501986
Target:  5'- ---gCGGCGGCGCggGCcGCUacgagCGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGagCGaCGG-----GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 67837 0.66 0.501986
Target:  5'- ---cCGGCGGgGCUgccggCGCUGgCgCGCGGc -3'
miRNA:   3'- cagaGCCGCCgCGA-----GCGACgG-GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 96333 0.66 0.501986
Target:  5'- uGUCggugggCGGCGG-GCUggcgugcgacgCGCUGCCgGCaGGg -3'
miRNA:   3'- -CAGa-----GCCGCCgCGA-----------GCGACGGgCG-CC- -5'
6498 5' -64.1 NC_001847.1 + 83469 0.66 0.501986
Target:  5'- ---aCGGCGcGCGCguaCGCcGCCCuguuGCGGg -3'
miRNA:   3'- cagaGCCGC-CGCGa--GCGaCGGG----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 87091 0.66 0.501986
Target:  5'- uUCgCGGCGcGCGCggacucgCGCUGUuuCCGCGc -3'
miRNA:   3'- cAGaGCCGC-CGCGa------GCGACG--GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 26270 0.66 0.501986
Target:  5'- cGUCgcaagacUGGUaGCGCUCGCUGCggcaagugacUCGCGGc -3'
miRNA:   3'- -CAGa------GCCGcCGCGAGCGACG----------GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29443 0.66 0.501986
Target:  5'- ---cUGG-GGCGUggCGCcGCCCGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGa-GCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 85245 0.66 0.501986
Target:  5'- ---cCGGCGGCGCcaggugCGCgagguaggUGgCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGa-----GCG--------ACgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 87839 0.66 0.501986
Target:  5'- aUCaCGcCGGCGggCGUgaugGCCCGCGGg -3'
miRNA:   3'- cAGaGCcGCCGCgaGCGa---CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 133763 0.66 0.501986
Target:  5'- ---cCGGCaGCGCgUGCUGCCgGCGc -3'
miRNA:   3'- cagaGCCGcCGCGaGCGACGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 130488 0.67 0.49649
Target:  5'- -gCUCGacGCGGCGCgucgggcugaggcgCGCgagcGCCgGCGGg -3'
miRNA:   3'- caGAGC--CGCCGCGa-------------GCGa---CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 27675 0.67 0.49649
Target:  5'- -gCUCGacGCGGCGCgucgggcugaggcgCGCgagcGCCgGCGGg -3'
miRNA:   3'- caGAGC--CGCCGCGa-------------GCGa---CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 6901 0.67 0.492841
Target:  5'- --gUCGGCGaGCGCgcgCGC-GCCCuGCGc -3'
miRNA:   3'- cagAGCCGC-CGCGa--GCGaCGGG-CGCc -5'
6498 5' -64.1 NC_001847.1 + 77073 0.67 0.492841
Target:  5'- -gCUgCGGCGcGCGCgcgCGCcaaucggcgGCCCGCGc -3'
miRNA:   3'- caGA-GCCGC-CGCGa--GCGa--------CGGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.