miRNA display CGI


Results 101 - 120 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 41196 0.67 0.492841
Target:  5'- cGUUUUGcGCGGCGacgCGCgucgcGCCCGUGa -3'
miRNA:   3'- -CAGAGC-CGCCGCga-GCGa----CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 61266 0.67 0.492841
Target:  5'- cGUCcgCGGCGcGCGCgggCGCcGCgCCGCc- -3'
miRNA:   3'- -CAGa-GCCGC-CGCGa--GCGaCG-GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 50981 0.67 0.492841
Target:  5'- --gUCGGCGGCGCa-GCUcgaGCgCGCGa -3'
miRNA:   3'- cagAGCCGCCGCGagCGA---CGgGCGCc -5'
6498 5' -64.1 NC_001847.1 + 77073 0.67 0.492841
Target:  5'- -gCUgCGGCGcGCGCgcgCGCcaaucggcgGCCCGCGc -3'
miRNA:   3'- caGA-GCCGC-CGCGa--GCGa--------CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 6901 0.67 0.492841
Target:  5'- --gUCGGCGaGCGCgcgCGC-GCCCuGCGc -3'
miRNA:   3'- cagAGCCGC-CGCGa--GCGaCGGG-CGCc -5'
6498 5' -64.1 NC_001847.1 + 51541 0.67 0.492841
Target:  5'- uGUCggaGGCuGCGCgcgCGCgcgugcucggGCUCGCGGg -3'
miRNA:   3'- -CAGag-CCGcCGCGa--GCGa---------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 6754 0.67 0.491931
Target:  5'- cGUCUgCGGUgcggccggugcgaGGCGC-CaGCUGCuCCGUGGc -3'
miRNA:   3'- -CAGA-GCCG-------------CCGCGaG-CGACG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 60801 0.67 0.487391
Target:  5'- -cCUUGGUGGCGCcCGCcagacacacUgauggcgcgaggggcGCCCGCGGc -3'
miRNA:   3'- caGAGCCGCCGCGaGCG---------A---------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 91688 0.67 0.483773
Target:  5'- -gCUCGGCGaccGCGC-CGUcGCCC-CGGg -3'
miRNA:   3'- caGAGCCGC---CGCGaGCGaCGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 112864 0.67 0.483773
Target:  5'- cGUCaCGGCcgacacGCGCgCGCUGCgCCGCGc -3'
miRNA:   3'- -CAGaGCCGc-----CGCGaGCGACG-GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 49835 0.67 0.483773
Target:  5'- --aUCGGCGaGCaGCUUGCguaUCCGCGGc -3'
miRNA:   3'- cagAGCCGC-CG-CGAGCGac-GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 19272 0.67 0.483773
Target:  5'- ---cCGGCGGCGCagCGuCUGUgCgGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa-GC-GACGgG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 33685 0.67 0.483773
Target:  5'- -gCUagaGGCgcaGGCGCUCGCgGCgCgGCGGc -3'
miRNA:   3'- caGAg--CCG---CCGCGAGCGaCG-GgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 30251 0.67 0.483773
Target:  5'- uGUCgcuGGCGGCGUUgcaGC-GCgCCGCGGc -3'
miRNA:   3'- -CAGag-CCGCCGCGAg--CGaCG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 10051 0.67 0.483773
Target:  5'- cGUCaCGGCcgacacGCGCgCGCUGCgCCGCGc -3'
miRNA:   3'- -CAGaGCCGc-----CGCGaGCGACG-GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 32636 0.67 0.483773
Target:  5'- ---gCGGCGcGCGCUCugccCUGCCUGCa- -3'
miRNA:   3'- cagaGCCGC-CGCGAGc---GACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 86930 0.67 0.481069
Target:  5'- ---gUGGCGGCGCUgCGCUccucggcccuggccGCCggCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGA-GCGA--------------CGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 124428 0.67 0.474786
Target:  5'- -aCUCgcuGGCGGCGCUUG--GCCggCGCGGg -3'
miRNA:   3'- caGAG---CCGCCGCGAGCgaCGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 86428 0.67 0.474786
Target:  5'- uUgUUGGCGGCGCUgCGCgg--CGCGGg -3'
miRNA:   3'- cAgAGCCGCCGCGA-GCGacggGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 40108 0.67 0.474786
Target:  5'- -cCUCGGUugguaGGUGCg-GCUGCgCGUGGg -3'
miRNA:   3'- caGAGCCG-----CCGCGagCGACGgGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.