miRNA display CGI


Results 121 - 140 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 46689 0.67 0.474786
Target:  5'- ---aCGcGCGcGCGgUCGggGCCCGCGGc -3'
miRNA:   3'- cagaGC-CGC-CGCgAGCgaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 86428 0.67 0.474786
Target:  5'- uUgUUGGCGGCGCUgCGCgg--CGCGGg -3'
miRNA:   3'- cAgAGCCGCCGCGA-GCGacggGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 131202 0.67 0.474786
Target:  5'- cUgUgGGUcGCGCUCGCcGCCCGCu- -3'
miRNA:   3'- cAgAgCCGcCGCGAGCGaCGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 124428 0.67 0.474786
Target:  5'- -aCUCgcuGGCGGCGCUUG--GCCggCGCGGg -3'
miRNA:   3'- caGAG---CCGCCGCGAGCgaCGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 40108 0.67 0.474786
Target:  5'- -cCUCGGUugguaGGUGCg-GCUGCgCGUGGg -3'
miRNA:   3'- caGAGCCG-----CCGCGagCGACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 21615 0.67 0.474786
Target:  5'- -aCUCgcuGGCGGCGCUUG--GCCggCGCGGg -3'
miRNA:   3'- caGAG---CCGCCGCGAGCgaCGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 106777 0.67 0.469434
Target:  5'- cGUCUcCGGCgcgagGGCGCcgggggcccgggcgCGCgGcCCCGCGGg -3'
miRNA:   3'- -CAGA-GCCG-----CCGCGa-------------GCGaC-GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 1284 0.67 0.465884
Target:  5'- --gUUGGCGGCGCggugGCUGgCCGCc- -3'
miRNA:   3'- cagAGCCGCCGCGag--CGACgGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 104097 0.67 0.465884
Target:  5'- --gUUGGCGGCGCggugGCUGgCCGCc- -3'
miRNA:   3'- cagAGCCGCCGCGag--CGACgGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 78588 0.67 0.465884
Target:  5'- aUCacgCGGCcGCGCUCccuggaGCUGCCgcCGCGGc -3'
miRNA:   3'- cAGa--GCCGcCGCGAG------CGACGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 93291 0.67 0.465884
Target:  5'- aUgUCGGCGGCGCgcaggcCGC-GCgCGCGu -3'
miRNA:   3'- cAgAGCCGCCGCGa-----GCGaCGgGCGCc -5'
6498 5' -64.1 NC_001847.1 + 56804 0.67 0.465884
Target:  5'- -gUUCGccgccGCGGCGCccaaGCcggGCCCGCGGc -3'
miRNA:   3'- caGAGC-----CGCCGCGag--CGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 66168 0.67 0.465884
Target:  5'- cUCUCGGCcGUGCcCGCgcggGCCgCGCuGGa -3'
miRNA:   3'- cAGAGCCGcCGCGaGCGa---CGG-GCG-CC- -5'
6498 5' -64.1 NC_001847.1 + 62581 0.67 0.465884
Target:  5'- -gCUCGGCuuuGCGUUUGC--CCCGCGGc -3'
miRNA:   3'- caGAGCCGc--CGCGAGCGacGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 44541 0.67 0.465884
Target:  5'- -gCUC-GCGGUGC-CGCUuauccgaacgacGCCCGUGGu -3'
miRNA:   3'- caGAGcCGCCGCGaGCGA------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 78309 0.67 0.465884
Target:  5'- ---aCGGCgcGGCGCggcgCGC-GCgCCGCGGg -3'
miRNA:   3'- cagaGCCG--CCGCGa---GCGaCG-GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 128751 0.67 0.465884
Target:  5'- gGUUUCcuucGCGGCGCUugccgccuucUGCUGCCgcaGCGGc -3'
miRNA:   3'- -CAGAGc---CGCCGCGA----------GCGACGGg--CGCC- -5'
6498 5' -64.1 NC_001847.1 + 101832 0.67 0.465884
Target:  5'- cGUCuUCGGUGuGCGC-CGUUGCgccugCCGCGa -3'
miRNA:   3'- -CAG-AGCCGC-CGCGaGCGACG-----GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 112859 0.67 0.465884
Target:  5'- cGUgUCGGCcucGGCGg-CGCUGCCUaCGGc -3'
miRNA:   3'- -CAgAGCCG---CCGCgaGCGACGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 81524 0.67 0.465884
Target:  5'- -gCUCgGGCGGUGCcacccCGCcGCCCGCc- -3'
miRNA:   3'- caGAG-CCGCCGCGa----GCGaCGGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.