miRNA display CGI


Results 61 - 80 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 25349 0.66 0.511204
Target:  5'- cGUCcacgUGGCGGCGgUCGCgGCgauCCGCa- -3'
miRNA:   3'- -CAGa---GCCGCCGCgAGCGaCG---GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 26270 0.66 0.501986
Target:  5'- cGUCgcaagacUGGUaGCGCUCGCUGCggcaagugacUCGCGGc -3'
miRNA:   3'- -CAGa------GCCGcCGCGAGCGACG----------GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 26590 0.71 0.282815
Target:  5'- -gCUUGGCGGCGaacCGC--CCCGCGGg -3'
miRNA:   3'- caGAGCCGCCGCga-GCGacGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 26992 0.71 0.258477
Target:  5'- cGUCUgCGGCGGCGCg-GUUGCCguacucgGCGGc -3'
miRNA:   3'- -CAGA-GCCGCCGCGagCGACGGg------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 27437 0.69 0.358966
Target:  5'- uGUCguucgCaGCGGCGCgggggcccugcCGCUGCCCGCc- -3'
miRNA:   3'- -CAGa----GcCGCCGCGa----------GCGACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 27675 0.67 0.49649
Target:  5'- -gCUCGacGCGGCGCgucgggcugaggcgCGCgagcGCCgGCGGg -3'
miRNA:   3'- caGAGC--CGCCGCGa-------------GCGa---CGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 27946 0.68 0.439711
Target:  5'- -cCUgGGCcgcGGCGCgCGC-GCUCGCGGu -3'
miRNA:   3'- caGAgCCG---CCGCGaGCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 28553 0.72 0.252666
Target:  5'- -cUUCGGCGGCGCggGCgacaCCCGCGa -3'
miRNA:   3'- caGAGCCGCCGCGagCGac--GGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 28615 0.69 0.366561
Target:  5'- -aCUUGGUgccgcccgaGGCGCUag-UGCCCGCGGg -3'
miRNA:   3'- caGAGCCG---------CCGCGAgcgACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 28626 0.68 0.414398
Target:  5'- ---gCGGCGGC---CGCgggGCCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGcgaGCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 28691 0.72 0.254977
Target:  5'- --aUCGGCGGCGCUgGCcuaccgggaccccuuUGUgCGCGGc -3'
miRNA:   3'- cagAGCCGCCGCGAgCG---------------ACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 28872 0.66 0.511204
Target:  5'- ---cCGGCGGCGCUggggcgaGUUGCagagcaCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGAg------CGACGg-----GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29285 0.7 0.295649
Target:  5'- -aUUCGcGCGGCGCUgGCgGCagaggCCGCGGc -3'
miRNA:   3'- caGAGC-CGCCGCGAgCGaCG-----GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29366 0.69 0.374265
Target:  5'- ---cCGGCGGCGCUgCGC-GCCgagGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGA-GCGaCGGg--CGCC- -5'
6498 5' -64.1 NC_001847.1 + 29443 0.66 0.501986
Target:  5'- ---cUGG-GGCGUggCGCcGCCCGCGGc -3'
miRNA:   3'- cagaGCCgCCGCGa-GCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29448 0.69 0.34411
Target:  5'- -aCUCGacgcGCGGCGCg-GCgGCCCGCGc -3'
miRNA:   3'- caGAGC----CGCCGCGagCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 29481 0.66 0.548731
Target:  5'- -cCUgGGCgcuGGCGCgcgCGCUguucaGCCCGcCGGc -3'
miRNA:   3'- caGAgCCG---CCGCGa--GCGA-----CGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 29497 0.71 0.282815
Target:  5'- cUCUCcggccgcgGGCGGCGCUUcggccgcagaGCUcGCCCGCGcGg -3'
miRNA:   3'- cAGAG--------CCGCCGCGAG----------CGA-CGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 29537 0.69 0.34411
Target:  5'- ---gCGGCcGCGCUCGCgGCCCuggaggccgccgGCGGg -3'
miRNA:   3'- cagaGCCGcCGCGAGCGaCGGG------------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 29997 0.69 0.351482
Target:  5'- ---gCGGCGGgagcCGC-CGCUGCCCGCc- -3'
miRNA:   3'- cagaGCCGCC----GCGaGCGACGGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.