miRNA display CGI


Results 101 - 120 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 33760 0.71 0.264397
Target:  5'- ---cCGGCGGCGC-CGCgggcagccCCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGaGCGac------GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 34009 0.7 0.3049
Target:  5'- uUCgCGGCGGUGCUgggcaccgCGCUGggccaggcgaugggcCCCGCGGc -3'
miRNA:   3'- cAGaGCCGCCGCGA--------GCGAC---------------GGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 34105 0.72 0.235878
Target:  5'- -gCUCGcGCGGCGg-CGgaGCCUGCGGc -3'
miRNA:   3'- caGAGC-CGCCGCgaGCgaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 34176 0.68 0.439711
Target:  5'- -gCUCGGagcuCGGCGCcgagcccCGCUGUuaCCGCGGc -3'
miRNA:   3'- caGAGCC----GCCGCGa------GCGACG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 34281 0.66 0.501986
Target:  5'- ---gCGGCugGGCGC-CGC-GCUCGCGGc -3'
miRNA:   3'- cagaGCCG--CCGCGaGCGaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 34519 0.66 0.529846
Target:  5'- ---gCGGaCGGCGCcggcgaugCGCcGCCCGcCGGg -3'
miRNA:   3'- cagaGCC-GCCGCGa-------GCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 35628 0.68 0.39
Target:  5'- ---cCGGCGGCGCUggggccagCGCUGgaCCGCGc -3'
miRNA:   3'- cagaGCCGCCGCGA--------GCGACg-GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 35675 0.69 0.34411
Target:  5'- cGUCgugaCGcaaGCGGCGCU-GCUGCUgGCGGc -3'
miRNA:   3'- -CAGa---GC---CGCCGCGAgCGACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 35893 0.66 0.529846
Target:  5'- aGUCggcggCGGCGGCGUggGacgGCgCGUGGg -3'
miRNA:   3'- -CAGa----GCCGCCGCGagCga-CGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 35933 0.66 0.548731
Target:  5'- ---gUGGCGGCGC--GCcGCCgCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGagCGaCGG-GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 35963 0.66 0.529846
Target:  5'- ---cUGGCGGCGCU-GCUGuggcuCCCGcCGGc -3'
miRNA:   3'- cagaGCCGCCGCGAgCGAC-----GGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 35985 0.66 0.520493
Target:  5'- ----aGGCGcGCGCagccgCGCUGCaggcggCCGCGGg -3'
miRNA:   3'- cagagCCGC-CGCGa----GCGACG------GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 36119 0.73 0.205109
Target:  5'- ----gGGCGGUGCUCGCcGCCCGaGGc -3'
miRNA:   3'- cagagCCGCCGCGAGCGaCGGGCgCC- -5'
6498 5' -64.1 NC_001847.1 + 36521 0.66 0.548731
Target:  5'- ---gCGGCGGUGUgcaCGCUGCgCgagGCGGa -3'
miRNA:   3'- cagaGCCGCCGCGa--GCGACGgG---CGCC- -5'
6498 5' -64.1 NC_001847.1 + 36858 0.68 0.398028
Target:  5'- -gCUCGGCGGCggccgaGCUCuacgcgggGCUGCUgGCGa -3'
miRNA:   3'- caGAGCCGCCG------CGAG--------CGACGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 37007 0.76 0.132899
Target:  5'- ---gCGGCGGCGCgcucgaGCUgacGCCCGCGGa -3'
miRNA:   3'- cagaGCCGCCGCGag----CGA---CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 37221 0.66 0.520493
Target:  5'- -gCUUGGCGGCGg-CGCggacGaCCCgGCGGa -3'
miRNA:   3'- caGAGCCGCCGCgaGCGa---C-GGG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 37573 0.74 0.173663
Target:  5'- ---gCGGCGGCGCUggcCGCUGCggCUGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGA---GCGACG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 37768 0.72 0.252666
Target:  5'- uUCUCGGaGG-GCUCGCgccugaucaugUGCCUGCGGc -3'
miRNA:   3'- cAGAGCCgCCgCGAGCG-----------ACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 38093 0.68 0.431175
Target:  5'- --gUCGGggaaagcagccCGGaCGC-CGCUGCCCgGCGGg -3'
miRNA:   3'- cagAGCC-----------GCC-GCGaGCGACGGG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.