miRNA display CGI


Results 121 - 140 of 420 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 40108 0.67 0.474786
Target:  5'- -cCUCGGUugguaGGUGCg-GCUGCgCGUGGg -3'
miRNA:   3'- caGAGCCG-----CCGCGagCGACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 41196 0.67 0.492841
Target:  5'- cGUUUUGcGCGGCGacgCGCgucgcGCCCGUGa -3'
miRNA:   3'- -CAGAGC-CGCCGCga-GCGa----CGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 41346 0.66 0.548731
Target:  5'- -aCUCGGC--CGC-CGCgGCCgCGCGGa -3'
miRNA:   3'- caGAGCCGccGCGaGCGaCGG-GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 42484 0.66 0.548731
Target:  5'- ----gGGCGGCGCgccgaagCGCUGCgggcgaaaCCGcCGGg -3'
miRNA:   3'- cagagCCGCCGCGa------GCGACG--------GGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 42980 0.68 0.422736
Target:  5'- ---cCGGcCGGCccggGUUCGCUGUCgGCGGg -3'
miRNA:   3'- cagaGCC-GCCG----CGAGCGACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 43117 0.74 0.186578
Target:  5'- ---cCGGCGGUGCccgcagacggCGCggGCCCGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa---------GCGa-CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 43253 0.68 0.439711
Target:  5'- ----gGGCGGCGCg-GC-GCCCGgGGg -3'
miRNA:   3'- cagagCCGCCGCGagCGaCGGGCgCC- -5'
6498 5' -64.1 NC_001847.1 + 43367 0.67 0.457068
Target:  5'- cGUCcgCGGCcaGCGC-CGCcgacggagcGCCCGCGGa -3'
miRNA:   3'- -CAGa-GCCGc-CGCGaGCGa--------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 43517 0.7 0.322665
Target:  5'- -aCUgGGCGGCGCgCGCggGCUuccuCGCGGc -3'
miRNA:   3'- caGAgCCGCCGCGaGCGa-CGG----GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 43696 0.68 0.420224
Target:  5'- ---cCGGCGcacuggcgugcuuuGCGCgCGCUGCgCGCGGa -3'
miRNA:   3'- cagaGCCGC--------------CGCGaGCGACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 44290 0.71 0.270426
Target:  5'- ---cCGGCGGCGCggCGCgGCgCgGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa-GCGaCG-GgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 44541 0.67 0.465884
Target:  5'- -gCUC-GCGGUGC-CGCUuauccgaacgacGCCCGUGGu -3'
miRNA:   3'- caGAGcCGCCGCGaGCGA------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 45640 0.67 0.465884
Target:  5'- ----aGcGCGGCGCgCGCUGCCgcaaUGCGGc -3'
miRNA:   3'- cagagC-CGCCGCGaGCGACGG----GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 46539 0.68 0.39
Target:  5'- ---gCGGCGGCGCgCGCgagguccuccaGCCgCGCGGc -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa----------CGG-GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 46689 0.67 0.474786
Target:  5'- ---aCGcGCGcGCGgUCGggGCCCGCGGc -3'
miRNA:   3'- cagaGC-CGC-CGCgAGCgaCGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 47553 0.66 0.520493
Target:  5'- ---aCGGCgGGCGCggGgaGCCCgGCGGc -3'
miRNA:   3'- cagaGCCG-CCGCGagCgaCGGG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 47792 0.67 0.454441
Target:  5'- --gUCGGCcucGGCGCcCGCgaucggcuccagguUGUCCGCGGu -3'
miRNA:   3'- cagAGCCG---CCGCGaGCG--------------ACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 48179 0.66 0.520493
Target:  5'- ---cCGGCGGCGUccUGCUGUgCCGCGc -3'
miRNA:   3'- cagaGCCGCCGCGa-GCGACG-GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 49172 0.71 0.284712
Target:  5'- cGUCUgccgaccauggacgCGGCGGCcaagacgguagccCUCGCgccgggGCCCGCGGg -3'
miRNA:   3'- -CAGA--------------GCCGCCGc------------GAGCGa-----CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 49259 0.69 0.382078
Target:  5'- ---cCGGCGaacGCGCUCGCUcagGUCCGCGc -3'
miRNA:   3'- cagaGCCGC---CGCGAGCGA---CGGGCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.