miRNA display CGI


Results 41 - 60 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 121718 0.7 0.330411
Target:  5'- gGUCUucaCGGCGcGCGCUggcgCGCccgucuuucucccggGCCCGCGGc -3'
miRNA:   3'- -CAGA---GCCGC-CGCGA----GCGa--------------CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 121613 0.67 0.448344
Target:  5'- ---cCGGCGGCGgUUGCUG-CCGCu- -3'
miRNA:   3'- cagaGCCGCCGCgAGCGACgGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 121595 0.68 0.438853
Target:  5'- -cUUCGGCGucgugcaGCGUcgCGCUGCCUaGCGGc -3'
miRNA:   3'- caGAGCCGC-------CGCGa-GCGACGGG-CGCC- -5'
6498 5' -64.1 NC_001847.1 + 120116 0.71 0.270426
Target:  5'- cUCgccCGGCGGCcgcgGCUCGCgcgGCCCcaccGCGGc -3'
miRNA:   3'- cAGa--GCCGCCG----CGAGCGa--CGGG----CGCC- -5'
6498 5' -64.1 NC_001847.1 + 119364 0.7 0.322665
Target:  5'- ---cCGcGCGGCGCUUGCcGCCgGCGa -3'
miRNA:   3'- cagaGC-CGCCGCGAGCGaCGGgCGCc -5'
6498 5' -64.1 NC_001847.1 + 119260 0.66 0.520493
Target:  5'- ---aUGGCGGCGCcCGCgcgGCUCGUcgaGGg -3'
miRNA:   3'- cagaGCCGCCGCGaGCGa--CGGGCG---CC- -5'
6498 5' -64.1 NC_001847.1 + 119207 0.69 0.351482
Target:  5'- -gCUCGuCGGCGC-CGCgGCcaCCGCGGg -3'
miRNA:   3'- caGAGCcGCCGCGaGCGaCG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 119147 0.69 0.351482
Target:  5'- -gCUCGuCGGCGC-CGCgGCcgCCGCGGg -3'
miRNA:   3'- caGAGCcGCCGCGaGCGaCG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 118430 0.7 0.308932
Target:  5'- gGUCUCGGCgccguGGgGCUC-CUGCUgGUGGc -3'
miRNA:   3'- -CAGAGCCG-----CCgCGAGcGACGGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 117339 0.68 0.406161
Target:  5'- ----gGGCGGC-CUCGCccCCCGCGGc -3'
miRNA:   3'- cagagCCGCCGcGAGCGacGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 117292 0.66 0.520493
Target:  5'- ---cCGGCGGCGCUgGCaacGCgagCCGCGa -3'
miRNA:   3'- cagaGCCGCCGCGAgCGa--CG---GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 116957 0.73 0.205109
Target:  5'- ---cUGGCGGUGCUCcgGCUGCCCuGCGa -3'
miRNA:   3'- cagaGCCGCCGCGAG--CGACGGG-CGCc -5'
6498 5' -64.1 NC_001847.1 + 116623 0.69 0.382078
Target:  5'- ---aCGGCGGCGCgcccgcagCGCUGgCcucggcagCCGCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa-------GCGAC-G--------GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 116500 0.68 0.431175
Target:  5'- ---aCGGCGucGCGCUCGCcgagcaccucUGCCUGCGc -3'
miRNA:   3'- cagaGCCGC--CGCGAGCG----------ACGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 116403 0.7 0.302235
Target:  5'- ---gCGGCGGCGCUCuggGCCC-CGGg -3'
miRNA:   3'- cagaGCCGCCGCGAGcgaCGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 116282 0.66 0.529846
Target:  5'- -gCUCGGCGaggcaGCGUgcccCGCUGaCCCGUGcGg -3'
miRNA:   3'- caGAGCCGC-----CGCGa---GCGAC-GGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 116119 0.68 0.39
Target:  5'- uUCUCGGCcuuucggccgGGCGCUggggCGCgcgGCCCGaGGc -3'
miRNA:   3'- cAGAGCCG----------CCGCGA----GCGa--CGGGCgCC- -5'
6498 5' -64.1 NC_001847.1 + 115913 0.7 0.315742
Target:  5'- -gCUCGcGCaGGCGCUgGCUGUCgcaGCGGc -3'
miRNA:   3'- caGAGC-CG-CCGCGAgCGACGGg--CGCC- -5'
6498 5' -64.1 NC_001847.1 + 115779 0.66 0.501986
Target:  5'- -gCUCGGCcagaGCGUUCGCggaGCCgcUGCGGc -3'
miRNA:   3'- caGAGCCGc---CGCGAGCGa--CGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 114942 0.7 0.295649
Target:  5'- -gUUUGGCGGgGCggggCGCcGCCCcGCGGu -3'
miRNA:   3'- caGAGCCGCCgCGa---GCGaCGGG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.