Results 81 - 100 of 420 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 15566 | 0.71 | 0.258477 |
Target: 5'- cGUCgggCcGCGGcCGC-CGCUGCCCGCa- -3' miRNA: 3'- -CAGa--GcCGCC-GCGaGCGACGGGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 26992 | 0.71 | 0.258477 |
Target: 5'- cGUCUgCGGCGGCGCg-GUUGCCguacucgGCGGc -3' miRNA: 3'- -CAGA-GCCGCCGCGagCGACGGg------CGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 61885 | 0.71 | 0.268001 |
Target: 5'- -aCUCGGCGuGCGCgcacggccucgagCGC-GCCCGCGc -3' miRNA: 3'- caGAGCCGC-CGCGa------------GCGaCGGGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 2405 | 0.71 | 0.270426 |
Target: 5'- -gCUCGGCcGUgGCUCGCUGCgCCGCu- -3' miRNA: 3'- caGAGCCGcCG-CGAGCGACG-GGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 61940 | 0.71 | 0.270426 |
Target: 5'- cGUCagCGGCGGCGCg----GCCCGCGcGg -3' miRNA: 3'- -CAGa-GCCGCCGCGagcgaCGGGCGC-C- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 101354 | 0.71 | 0.276565 |
Target: 5'- -gCUCGgggcugcauGCGcGCGCUUgcgccgcggggGCUGCCCGCGGc -3' miRNA: 3'- caGAGC---------CGC-CGCGAG-----------CGACGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 129403 | 0.71 | 0.282815 |
Target: 5'- -gCUUGGCGGCGaacCGC--CCCGCGGg -3' miRNA: 3'- caGAGCCGCCGCga-GCGacGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 99027 | 0.72 | 0.246963 |
Target: 5'- -cCUCgGGCGGCGa--GCaccGCCCGCGGa -3' miRNA: 3'- caGAG-CCGCCGCgagCGa--CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 91603 | 0.72 | 0.241367 |
Target: 5'- cUCgCGGCGGCGCUUcuccucgcgGCUGCggCUGCGGc -3' miRNA: 3'- cAGaGCCGCCGCGAG---------CGACG--GGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 18648 | 0.72 | 0.241367 |
Target: 5'- -gCUCGGCGaGCGCgaCGCcgUGCCCGCc- -3' miRNA: 3'- caGAGCCGC-CGCGa-GCG--ACGGGCGcc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 17788 | 0.73 | 0.220035 |
Target: 5'- -cUUCGGCGGgGCuUUGCUcGgCCGCGGg -3' miRNA: 3'- caGAGCCGCCgCG-AGCGA-CgGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 31865 | 0.73 | 0.220035 |
Target: 5'- -gCUCGcCGGCGUU-GCUGCCgGCGGa -3' miRNA: 3'- caGAGCcGCCGCGAgCGACGGgCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 134386 | 0.72 | 0.22469 |
Target: 5'- ---cCGGCGGCGggccggcCUCGCccuagggggGCCCGCGGg -3' miRNA: 3'- cagaGCCGCCGC-------GAGCGa--------CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 81684 | 0.72 | 0.225212 |
Target: 5'- -gCUCgcgGGCGaGUGCUCGCUGCgCGCGc -3' miRNA: 3'- caGAG---CCGC-CGCGAGCGACGgGCGCc -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 53848 | 0.72 | 0.230493 |
Target: 5'- ---gCGGCGGCGCUgGCggcGCUgGCGGc -3' miRNA: 3'- cagaGCCGCCGCGAgCGa--CGGgCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 34105 | 0.72 | 0.235878 |
Target: 5'- -gCUCGcGCGGCGg-CGgaGCCUGCGGc -3' miRNA: 3'- caGAGC-CGCCGCgaGCgaCGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 65241 | 0.72 | 0.235878 |
Target: 5'- ----gGGCGGCGCUuuucCGCcacccggGCCCGCGGc -3' miRNA: 3'- cagagCCGCCGCGA----GCGa------CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 133147 | 0.72 | 0.235878 |
Target: 5'- ---gUGGUGGUGCUcuacgaccCGCUGCCCGgGGa -3' miRNA: 3'- cagaGCCGCCGCGA--------GCGACGGGCgCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 83010 | 0.72 | 0.240814 |
Target: 5'- cUCgUCGGUccgcuggGGCGC-CGCcgGCCCGCGGc -3' miRNA: 3'- cAG-AGCCG-------CCGCGaGCGa-CGGGCGCC- -5' |
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6498 | 5' | -64.1 | NC_001847.1 | + | 29497 | 0.71 | 0.282815 |
Target: 5'- cUCUCcggccgcgGGCGGCGCUUcggccgcagaGCUcGCCCGCGcGg -3' miRNA: 3'- cAGAG--------CCGCCGCGAG----------CGA-CGGGCGC-C- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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