Results 101 - 120 of 420 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 114942 | 0.7 | 0.295649 |
Target: 5'- -gUUUGGCGGgGCggggCGCcGCCCcGCGGu -3' miRNA: 3'- caGAGCCGCCgCGa---GCGaCGGG-CGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 17310 | 0.7 | 0.302235 |
Target: 5'- -aCUCGGCGGCGCggcacacggcCGCguaGCCgGCGc -3' miRNA: 3'- caGAGCCGCCGCGa---------GCGa--CGGgCGCc -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 34009 | 0.7 | 0.3049 |
Target: 5'- uUCgCGGCGGUGCUgggcaccgCGCUGggccaggcgaugggcCCCGCGGc -3' miRNA: 3'- cAGaGCCGCCGCGA--------GCGAC---------------GGGCGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 77508 | 0.7 | 0.308932 |
Target: 5'- --gUCGGUGGCcggggaGCUCGCgcgUGCCUGCGa -3' miRNA: 3'- cagAGCCGCCG------CGAGCG---ACGGGCGCc -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 60432 | 0.7 | 0.315056 |
Target: 5'- -gCUCGGCGuccacgcGCGCgucggCGCUGCCCccguCGGg -3' miRNA: 3'- caGAGCCGC-------CGCGa----GCGACGGGc---GCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 2405 | 0.71 | 0.270426 |
Target: 5'- -gCUCGGCcGUgGCUCGCUGCgCCGCu- -3' miRNA: 3'- caGAGCCGcCG-CGAGCGACG-GGCGcc -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 61885 | 0.71 | 0.268001 |
Target: 5'- -aCUCGGCGuGCGCgcacggccucgagCGC-GCCCGCGc -3' miRNA: 3'- caGAGCCGC-CGCGa------------GCGaCGGGCGCc -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 53848 | 0.72 | 0.230493 |
Target: 5'- ---gCGGCGGCGCUgGCggcGCUgGCGGc -3' miRNA: 3'- cagaGCCGCCGCGAgCGa--CGGgCGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 34105 | 0.72 | 0.235878 |
Target: 5'- -gCUCGcGCGGCGg-CGgaGCCUGCGGc -3' miRNA: 3'- caGAGC-CGCCGCgaGCgaCGGGCGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 65241 | 0.72 | 0.235878 |
Target: 5'- ----gGGCGGCGCUuuucCGCcacccggGCCCGCGGc -3' miRNA: 3'- cagagCCGCCGCGA----GCGa------CGGGCGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 133147 | 0.72 | 0.235878 |
Target: 5'- ---gUGGUGGUGCUcuacgaccCGCUGCCCGgGGa -3' miRNA: 3'- cagaGCCGCCGCGA--------GCGACGGGCgCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 83010 | 0.72 | 0.240814 |
Target: 5'- cUCgUCGGUccgcuggGGCGC-CGCcgGCCCGCGGc -3' miRNA: 3'- cAG-AGCCG-------CCGCGaGCGa-CGGGCGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 18648 | 0.72 | 0.241367 |
Target: 5'- -gCUCGGCGaGCGCgaCGCcgUGCCCGCc- -3' miRNA: 3'- caGAGCCGC-CGCGa-GCG--ACGGGCGcc -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 91603 | 0.72 | 0.241367 |
Target: 5'- cUCgCGGCGGCGCUUcuccucgcgGCUGCggCUGCGGc -3' miRNA: 3'- cAGaGCCGCCGCGAG---------CGACG--GGCGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 99027 | 0.72 | 0.246963 |
Target: 5'- -cCUCgGGCGGCGa--GCaccGCCCGCGGa -3' miRNA: 3'- caGAG-CCGCCGCgagCGa--CGGGCGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 37768 | 0.72 | 0.252666 |
Target: 5'- uUCUCGGaGG-GCUCGCgccugaucaugUGCCUGCGGc -3' miRNA: 3'- cAGAGCCgCCgCGAGCG-----------ACGGGCGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 131366 | 0.72 | 0.252666 |
Target: 5'- -cUUCGGCGGCGCggGCgacaCCCGCGa -3' miRNA: 3'- caGAGCCGCCGCGagCGac--GGGCGCc -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 28691 | 0.72 | 0.254977 |
Target: 5'- --aUCGGCGGCGCUgGCcuaccgggaccccuuUGUgCGCGGc -3' miRNA: 3'- cagAGCCGCCGCGAgCG---------------ACGgGCGCC- -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 15566 | 0.71 | 0.258477 |
Target: 5'- cGUCgggCcGCGGcCGC-CGCUGCCCGCa- -3' miRNA: 3'- -CAGa--GcCGCC-GCGaGCGACGGGCGcc -5' |
|||||||
6498 | 5' | -64.1 | NC_001847.1 | + | 26992 | 0.71 | 0.258477 |
Target: 5'- cGUCUgCGGCGGCGCg-GUUGCCguacucgGCGGc -3' miRNA: 3'- -CAGA-GCCGCCGCGagCGACGGg------CGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home