miRNA display CGI


Results 121 - 140 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 109949 0.7 0.332547
Target:  5'- gGUCUUgcccccuccccuucgGGCGugucGCGCUCGCUcGCCCggGCGGu -3'
miRNA:   3'- -CAGAG---------------CCGC----CGCGAGCGA-CGGG--CGCC- -5'
6498 5' -64.1 NC_001847.1 + 114245 0.69 0.34411
Target:  5'- -gCUCGcccGCGacGCGCUCGCUGCCCaGCc- -3'
miRNA:   3'- caGAGC---CGC--CGCGAGCGACGGG-CGcc -5'
6498 5' -64.1 NC_001847.1 + 29285 0.7 0.295649
Target:  5'- -aUUCGcGCGGCGCUgGCgGCagaggCCGCGGc -3'
miRNA:   3'- caGAGC-CGCCGCGAgCGaCG-----GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 75856 0.7 0.295649
Target:  5'- gGUCUCGGCGGUGU----UGCgCGCGGc -3'
miRNA:   3'- -CAGAGCCGCCGCGagcgACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 96167 0.7 0.293695
Target:  5'- cGUCUacuaagccccgccgCGGCcgccgccauGGCGCUCGCgGCCCcCGGg -3'
miRNA:   3'- -CAGA--------------GCCG---------CCGCGAGCGaCGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 91603 0.72 0.241367
Target:  5'- cUCgCGGCGGCGCUUcuccucgcgGCUGCggCUGCGGc -3'
miRNA:   3'- cAGaGCCGCCGCGAG---------CGACG--GGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 99027 0.72 0.246963
Target:  5'- -cCUCgGGCGGCGa--GCaccGCCCGCGGa -3'
miRNA:   3'- caGAG-CCGCCGCgagCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 37768 0.72 0.252666
Target:  5'- uUCUCGGaGG-GCUCGCgccugaucaugUGCCUGCGGc -3'
miRNA:   3'- cAGAGCCgCCgCGAGCG-----------ACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 131366 0.72 0.252666
Target:  5'- -cUUCGGCGGCGCggGCgacaCCCGCGa -3'
miRNA:   3'- caGAGCCGCCGCGagCGac--GGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 28691 0.72 0.254977
Target:  5'- --aUCGGCGGCGCUgGCcuaccgggaccccuuUGUgCGCGGc -3'
miRNA:   3'- cagAGCCGCCGCGAgCG---------------ACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 15566 0.71 0.258477
Target:  5'- cGUCgggCcGCGGcCGC-CGCUGCCCGCa- -3'
miRNA:   3'- -CAGa--GcCGCC-GCGaGCGACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 26992 0.71 0.258477
Target:  5'- cGUCUgCGGCGGCGCg-GUUGCCguacucgGCGGc -3'
miRNA:   3'- -CAGA-GCCGCCGCGagCGACGGg------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 132350 0.69 0.34411
Target:  5'- ---gCGGCcGCGCUCGCgGCCCuggaggccgccgGCGGg -3'
miRNA:   3'- cagaGCCGcCGCGAGCGaCGGG------------CGCC- -5'
6498 5' -64.1 NC_001847.1 + 61885 0.71 0.268001
Target:  5'- -aCUCGGCGuGCGCgcacggccucgagCGC-GCCCGCGc -3'
miRNA:   3'- caGAGCCGC-CGCGa------------GCGaCGGGCGCc -5'
6498 5' -64.1 NC_001847.1 + 2405 0.71 0.270426
Target:  5'- -gCUCGGCcGUgGCUCGCUGCgCCGCu- -3'
miRNA:   3'- caGAGCCGcCG-CGAGCGACG-GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 61940 0.71 0.270426
Target:  5'- cGUCagCGGCGGCGCg----GCCCGCGcGg -3'
miRNA:   3'- -CAGa-GCCGCCGCGagcgaCGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 101354 0.71 0.276565
Target:  5'- -gCUCGgggcugcauGCGcGCGCUUgcgccgcggggGCUGCCCGCGGc -3'
miRNA:   3'- caGAGC---------CGC-CGCGAG-----------CGACGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 129403 0.71 0.282815
Target:  5'- -gCUUGGCGGCGaacCGC--CCCGCGGg -3'
miRNA:   3'- caGAGCCGCCGCga-GCGacGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 29497 0.71 0.282815
Target:  5'- cUCUCcggccgcgGGCGGCGCUUcggccgcagaGCUcGCCCGCGcGg -3'
miRNA:   3'- cAGAG--------CCGCCGCGAG----------CGA-CGGGCGC-C- -5'
6498 5' -64.1 NC_001847.1 + 49172 0.71 0.284712
Target:  5'- cGUCUgccgaccauggacgCGGCGGCcaagacgguagccCUCGCgccgggGCCCGCGGg -3'
miRNA:   3'- -CAGA--------------GCCGCCGc------------GAGCGa-----CGGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.