miRNA display CGI


Results 81 - 100 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6498 5' -64.1 NC_001847.1 + 56766 0.67 0.492841
Target:  5'- -cCUCGGCcauGCGC-CGCgauUGCCCGCc- -3'
miRNA:   3'- caGAGCCGc--CGCGaGCG---ACGGGCGcc -5'
6498 5' -64.1 NC_001847.1 + 10051 0.67 0.483773
Target:  5'- cGUCaCGGCcgacacGCGCgCGCUGCgCCGCGc -3'
miRNA:   3'- -CAGaGCCGc-----CGCGaGCGACG-GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 64439 0.67 0.474786
Target:  5'- cGUCguagUCGGCGGCcacgGC-CaGCcccggGCCCGCGGu -3'
miRNA:   3'- -CAG----AGCCGCCG----CGaG-CGa----CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 21615 0.67 0.474786
Target:  5'- -aCUCgcuGGCGGCGCUUG--GCCggCGCGGg -3'
miRNA:   3'- caGAG---CCGCCGCGAGCgaCGG--GCGCC- -5'
6498 5' -64.1 NC_001847.1 + 112859 0.67 0.465884
Target:  5'- cGUgUCGGCcucGGCGg-CGCUGCCUaCGGc -3'
miRNA:   3'- -CAgAGCCG---CCGCgaGCGACGGGcGCC- -5'
6498 5' -64.1 NC_001847.1 + 61850 0.67 0.457068
Target:  5'- cGUCgcCGGCGuaggccGCGCcUGCcggcGCCCGCGGg -3'
miRNA:   3'- -CAGa-GCCGC------CGCGaGCGa---CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 58011 0.67 0.457068
Target:  5'- ---gCGGCGGCGgUCGC-GCgCGCGc -3'
miRNA:   3'- cagaGCCGCCGCgAGCGaCGgGCGCc -5'
6498 5' -64.1 NC_001847.1 + 117292 0.66 0.520493
Target:  5'- ---cCGGCGGCGCUgGCaacGCgagCCGCGa -3'
miRNA:   3'- cagaGCCGCCGCGAgCGa--CG---GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 81077 0.66 0.529846
Target:  5'- ----aGGCGGCGacggCGCUGgCgGCGGc -3'
miRNA:   3'- cagagCCGCCGCga--GCGACgGgCGCC- -5'
6498 5' -64.1 NC_001847.1 + 104381 0.66 0.529846
Target:  5'- ---aCGcGCGGCGCUgcaGCgGgCCGCGGu -3'
miRNA:   3'- cagaGC-CGCCGCGAg--CGaCgGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 55002 0.68 0.431175
Target:  5'- cGUCaUGGCGGCGCUgGaguccaUGCgCGCGu -3'
miRNA:   3'- -CAGaGCCGCCGCGAgCg-----ACGgGCGCc -5'
6498 5' -64.1 NC_001847.1 + 74674 0.68 0.422736
Target:  5'- ---gCGGCGGCGCcauggcggaCGC-GCCCGaCGGg -3'
miRNA:   3'- cagaGCCGCCGCGa--------GCGaCGGGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 28626 0.68 0.414398
Target:  5'- ---gCGGCGGC---CGCgggGCCCGCGGc -3'
miRNA:   3'- cagaGCCGCCGcgaGCGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 117339 0.68 0.406161
Target:  5'- ----gGGCGGC-CUCGCccCCCGCGGc -3'
miRNA:   3'- cagagCCGCCGcGAGCGacGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 131673 0.68 0.398028
Target:  5'- cUCUCGGCGcgccggcgcGCGCUUGCUGUcgacuuCCGCc- -3'
miRNA:   3'- cAGAGCCGC---------CGCGAGCGACG------GGCGcc -5'
6498 5' -64.1 NC_001847.1 + 42484 0.66 0.548731
Target:  5'- ----gGGCGGCGCgccgaagCGCUGCgggcgaaaCCGcCGGg -3'
miRNA:   3'- cagagCCGCCGCGa------GCGACG--------GGC-GCC- -5'
6498 5' -64.1 NC_001847.1 + 101868 0.66 0.548731
Target:  5'- gGUCgCGGaGGaGCUCGCcuuUGCgCGCGGa -3'
miRNA:   3'- -CAGaGCCgCCgCGAGCG---ACGgGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 110 0.66 0.53926
Target:  5'- gGUC-CGGCGccccGCGCcccgGCcccGCCCGCGGg -3'
miRNA:   3'- -CAGaGCCGC----CGCGag--CGa--CGGGCGCC- -5'
6498 5' -64.1 NC_001847.1 + 4553 0.66 0.53926
Target:  5'- cGUCUcCGGCGcCGUcguccUCGCUGCucuCCGCGu -3'
miRNA:   3'- -CAGA-GCCGCcGCG-----AGCGACG---GGCGCc -5'
6498 5' -64.1 NC_001847.1 + 66664 0.66 0.529846
Target:  5'- ---cUGGC-GCGCUUGC-GCCCGCGcGg -3'
miRNA:   3'- cagaGCCGcCGCGAGCGaCGGGCGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.