Results 61 - 80 of 777 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 25592 | 0.66 | 0.983193 |
Target: 5'- gUCGUcCAGAGGcacgcuCCGAGcACGCACGCGc -3' miRNA: 3'- -GGCGcGUCUUU------GGUUC-UGUGUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 80116 | 0.66 | 0.983193 |
Target: 5'- cCUGCGCAaacgcGCCc-GACGCGCGCa- -3' miRNA: 3'- -GGCGCGUcuu--UGGuuCUGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 875 | 0.66 | 0.983193 |
Target: 5'- aCGCGCGGcGgcggcccgcGCCGGGGcCGC-CGCGGc -3' miRNA: 3'- gGCGCGUCuU---------UGGUUCU-GUGuGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 125290 | 0.66 | 0.976513 |
Target: 5'- gCCGuCGCAGGugGGgCAAGGCugGcCGUGGc -3' miRNA: 3'- -GGC-GCGUCU--UUgGUUCUGugU-GCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 10662 | 0.66 | 0.98115 |
Target: 5'- -aGCGCuuGGACUugaacGCGCACGCGAa -3' miRNA: 3'- ggCGCGucUUUGGuuc--UGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 61957 | 0.66 | 0.98115 |
Target: 5'- cCCGCGCGGGccGACUccGcCGC-CGCGu -3' miRNA: 3'- -GGCGCGUCU--UUGGuuCuGUGuGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 30494 | 0.66 | 0.983193 |
Target: 5'- uCgGCGCGGc--CCucGGGCGCGCGCu- -3' miRNA: 3'- -GgCGCGUCuuuGGu-UCUGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 132144 | 0.66 | 0.976513 |
Target: 5'- aCGCGguGGAGCgCGcgcGGCuccaGCGCGCGGc -3' miRNA: 3'- gGCGCguCUUUG-GUu--CUG----UGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 41135 | 0.66 | 0.980936 |
Target: 5'- -gGCGCGGAcauggcgucgucgAACCGcgAGugAgCGCGCGGc -3' miRNA: 3'- ggCGCGUCU-------------UUGGU--UCugU-GUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 95338 | 0.66 | 0.975751 |
Target: 5'- cCCGcCGCGGAcgacgcggucgacuGGCgGGGGCugGCgGCGGa -3' miRNA: 3'- -GGC-GCGUCU--------------UUGgUUCUGugUG-CGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 87993 | 0.66 | 0.974971 |
Target: 5'- cCCGgcUGCAGAAGagcacgcaaaccuucCCGGGcCACGCGCGc -3' miRNA: 3'- -GGC--GCGUCUUU---------------GGUUCuGUGUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 90010 | 0.66 | 0.971089 |
Target: 5'- aCCcCGCAGAAggcGCCGAGcuGCACcuGCGCu- -3' miRNA: 3'- -GGcGCGUCUU---UGGUUC--UGUG--UGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 36535 | 0.66 | 0.976513 |
Target: 5'- gCUGCGCgaggcGGAuuCgGAGAUugACGCGc -3' miRNA: 3'- -GGCGCG-----UCUuuGgUUCUGugUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 103688 | 0.66 | 0.983193 |
Target: 5'- aCGCGCGGcGgcggcccgcGCCGGGGcCGC-CGCGGc -3' miRNA: 3'- gGCGCGUCuU---------UGGUUCU-GUGuGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 123691 | 0.66 | 0.983193 |
Target: 5'- aCGCGCAcGGuAGCC---GCugGCGCGGg -3' miRNA: 3'- gGCGCGU-CU-UUGGuucUGugUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 133551 | 0.66 | 0.971089 |
Target: 5'- gCCGCGCGcuGGcCCGAGcggcGCGCugGCGc -3' miRNA: 3'- -GGCGCGUcuUU-GGUUC----UGUGugCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 97155 | 0.66 | 0.971089 |
Target: 5'- cCCGgGCcuccccaaAGAcacuGCCGGcGCGCACGCGGg -3' miRNA: 3'- -GGCgCG--------UCUu---UGGUUcUGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 70309 | 0.66 | 0.973903 |
Target: 5'- gCCGCGCuggucucGGAGCUGAaGCGCccgguGCGCGAc -3' miRNA: 3'- -GGCGCGu------CUUUGGUUcUGUG-----UGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 90513 | 0.66 | 0.973903 |
Target: 5'- gUGCuGCAGGAGCUGGcGCGCAUGCuGAa -3' miRNA: 3'- gGCG-CGUCUUUGGUUcUGUGUGCG-CU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 35173 | 0.66 | 0.978693 |
Target: 5'- aCCGC-CGGggGCaCGcggccuucgaggaGGAgCGCGCGCGGc -3' miRNA: 3'- -GGCGcGUCuuUG-GU-------------UCU-GUGUGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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