miRNA display CGI


Results 81 - 100 of 777 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 95338 0.66 0.975751
Target:  5'- cCCGcCGCGGAcgacgcggucgacuGGCgGGGGCugGCgGCGGa -3'
miRNA:   3'- -GGC-GCGUCU--------------UUGgUUCUGugUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 92736 0.66 0.973903
Target:  5'- cUCGCGCAGcgcguggcAGGCCAGGAC-CuCGCc- -3'
miRNA:   3'- -GGCGCGUC--------UUUGGUUCUGuGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 69660 0.66 0.98115
Target:  5'- aCCGCGCcauGGACCGccAGAgcgagccucCGCGCGCGc -3'
miRNA:   3'- -GGCGCGuc-UUUGGU--UCU---------GUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 6402 0.66 0.978926
Target:  5'- gCCGCGaaGGAAACCAAGuCGgggaAgGCGAg -3'
miRNA:   3'- -GGCGCg-UCUUUGGUUCuGUg---UgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 132144 0.66 0.976513
Target:  5'- aCGCGguGGAGCgCGcgcGGCuccaGCGCGCGGc -3'
miRNA:   3'- gGCGCguCUUUG-GUu--CUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 54437 0.66 0.978926
Target:  5'- cCCGgGCAGAGA-CGAGGgGgGCGgGGa -3'
miRNA:   3'- -GGCgCGUCUUUgGUUCUgUgUGCgCU- -5'
6500 3' -52.4 NC_001847.1 + 131849 0.66 0.973903
Target:  5'- gCCGCGCuc--GCCGAGcUGCGCGCc- -3'
miRNA:   3'- -GGCGCGucuuUGGUUCuGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 83441 0.66 0.973903
Target:  5'- aCGCGUucGAccCCGAcGACGgCGCGCGAc -3'
miRNA:   3'- gGCGCGu-CUuuGGUU-CUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 132436 0.66 0.982997
Target:  5'- -gGUGgAGGAcaugaggGCCGGGGCGC-CGCGGg -3'
miRNA:   3'- ggCGCgUCUU-------UGGUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 41135 0.66 0.980936
Target:  5'- -gGCGCGGAcauggcgucgucgAACCGcgAGugAgCGCGCGGc -3'
miRNA:   3'- ggCGCGUCU-------------UUGGU--UCugU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 48431 0.66 0.982599
Target:  5'- gCCGCGUGGAGuugagcaccagcACCGagggcgugaaggugAGGCaaaaGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU------------UGGU--------------UCUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 18482 0.66 0.98115
Target:  5'- uCCGUGCGGcAGUCGuaGCGCGCGCGc -3'
miRNA:   3'- -GGCGCGUCuUUGGUucUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 7053 0.66 0.978926
Target:  5'- uUGgGCuuucgccACCAAGGCACGCgGCGAg -3'
miRNA:   3'- gGCgCGucuu---UGGUUCUGUGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 19121 0.66 0.98115
Target:  5'- gCGCGCAGugcACCGGcACAC-CGCa- -3'
miRNA:   3'- gGCGCGUCuu-UGGUUcUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 61957 0.66 0.98115
Target:  5'- cCCGCGCGGGccGACUccGcCGC-CGCGu -3'
miRNA:   3'- -GGCGCGUCU--UUGGuuCuGUGuGCGCu -5'
6500 3' -52.4 NC_001847.1 + 91720 0.66 0.971089
Target:  5'- aCCGCGCGacgcGAGGCCcAGcugcagcgcccuGCGCGCGuCGGc -3'
miRNA:   3'- -GGCGCGU----CUUUGGuUC------------UGUGUGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 133551 0.66 0.971089
Target:  5'- gCCGCGCGcuGGcCCGAGcggcGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUU-GGUUC----UGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 90513 0.66 0.973903
Target:  5'- gUGCuGCAGGAGCUGGcGCGCAUGCuGAa -3'
miRNA:   3'- gGCG-CGUCUUUGGUUcUGUGUGCG-CU- -5'
6500 3' -52.4 NC_001847.1 + 97155 0.66 0.971089
Target:  5'- cCCGgGCcuccccaaAGAcacuGCCGGcGCGCACGCGGg -3'
miRNA:   3'- -GGCgCG--------UCUu---UGGUUcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 52429 0.66 0.978926
Target:  5'- cCCGCGCGuGGAGCacauGGAC-CugGaCGAc -3'
miRNA:   3'- -GGCGCGU-CUUUGgu--UCUGuGugC-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.