miRNA display CGI


Results 101 - 120 of 777 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 111248 0.66 0.978926
Target:  5'- gCUGCGCccGAACCugccgcuGAUGCGCGCGc -3'
miRNA:   3'- -GGCGCGucUUUGGuu-----CUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 32904 0.66 0.983193
Target:  5'- gCCGCGCGcGAGcGCCuGGACGC-CGUc- -3'
miRNA:   3'- -GGCGCGU-CUU-UGGuUCUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 91720 0.66 0.971089
Target:  5'- aCCGCGCGacgcGAGGCCcAGcugcagcgcccuGCGCGCGuCGGc -3'
miRNA:   3'- -GGCGCGU----CUUUGGuUC------------UGUGUGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 90010 0.66 0.971089
Target:  5'- aCCcCGCAGAAggcGCCGAGcuGCACcuGCGCu- -3'
miRNA:   3'- -GGcGCGUCUU---UGGUUC--UGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 37331 0.66 0.983193
Target:  5'- aCGCGCccGAcgcGGCC---ACGCGCGCGAc -3'
miRNA:   3'- gGCGCGu-CU---UUGGuucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 24389 0.66 0.983193
Target:  5'- -gGCGC-GAAcuCCGGcgcGGCGCGCGCGGg -3'
miRNA:   3'- ggCGCGuCUUu-GGUU---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 70309 0.66 0.973903
Target:  5'- gCCGCGCuggucucGGAGCUGAaGCGCccgguGCGCGAc -3'
miRNA:   3'- -GGCGCGu------CUUUGGUUcUGUG-----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 95338 0.66 0.975751
Target:  5'- cCCGcCGCGGAcgacgcggucgacuGGCgGGGGCugGCgGCGGa -3'
miRNA:   3'- -GGC-GCGUCU--------------UUGgUUCUGugUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 34818 0.66 0.976513
Target:  5'- -gGCGCGGcAGGCCGaccGGGCGCugGaggCGAg -3'
miRNA:   3'- ggCGCGUC-UUUGGU---UCUGUGugC---GCU- -5'
6500 3' -52.4 NC_001847.1 + 110751 0.66 0.976513
Target:  5'- cCCGCGCGcgccgcGCCgGAGuucGCGCAUGCGGg -3'
miRNA:   3'- -GGCGCGUcuu---UGG-UUC---UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 18453 0.66 0.976261
Target:  5'- gCCGUGCGGu-GCCGcgcccgcagcgccGGACccACACGCa- -3'
miRNA:   3'- -GGCGCGUCuuUGGU-------------UCUG--UGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 10 0.66 0.972239
Target:  5'- cCCGCGCGGGGggcGCgGAGAaaaaaaaaauuuuuuC-CGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU---UGgUUCU---------------GuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 11312 0.66 0.98115
Target:  5'- gCGCGCccgccGAGGCCGgcGGGCgGCugGCGc -3'
miRNA:   3'- gGCGCGu----CUUUGGU--UCUG-UGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 44688 0.66 0.978926
Target:  5'- gCCGCGgAuGGGCCGcgcGGAC-CGCGCGc -3'
miRNA:   3'- -GGCGCgUcUUUGGU---UCUGuGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 6402 0.66 0.978926
Target:  5'- gCCGCGaaGGAAACCAAGuCGgggaAgGCGAg -3'
miRNA:   3'- -GGCGCg-UCUUUGGUUCuGUg---UgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 54437 0.66 0.978926
Target:  5'- cCCGgGCAGAGA-CGAGGgGgGCGgGGa -3'
miRNA:   3'- -GGCgCGUCUUUgGUUCUgUgUGCgCU- -5'
6500 3' -52.4 NC_001847.1 + 8104 0.66 0.983193
Target:  5'- gCGaCGCGGc-GCCAGcGCAgGCGCGGg -3'
miRNA:   3'- gGC-GCGUCuuUGGUUcUGUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 48431 0.66 0.982599
Target:  5'- gCCGCGUGGAGuugagcaccagcACCGagggcgugaaggugAGGCaaaaGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU------------UGGU--------------UCUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 25103 0.66 0.983193
Target:  5'- aCCGCGguu-GAgCAAGAUuCGCGCGAc -3'
miRNA:   3'- -GGCGCgucuUUgGUUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 69350 0.66 0.971089
Target:  5'- gCgGCGCuGguGCU--GGCGCGCGCGGc -3'
miRNA:   3'- -GgCGCGuCuuUGGuuCUGUGUGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.