miRNA display CGI


Results 141 - 160 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 2154 0.66 0.978926
Target:  5'- gCUGCGCAGc-ACCAGGucuCGCAgCGCc- -3'
miRNA:   3'- -GGCGCGUCuuUGGUUCu--GUGU-GCGcu -5'
6500 3' -52.4 NC_001847.1 + 6402 0.66 0.978926
Target:  5'- gCCGCGaaGGAAACCAAGuCGgggaAgGCGAg -3'
miRNA:   3'- -GGCGCg-UCUUUGGUUCuGUg---UgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 32904 0.66 0.983193
Target:  5'- gCCGCGCGcGAGcGCCuGGACGC-CGUc- -3'
miRNA:   3'- -GGCGCGU-CUU-UGGuUCUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 65814 0.66 0.983193
Target:  5'- gCCGCcaGCAGcgcCCGAGGCcCGCGCc- -3'
miRNA:   3'- -GGCG--CGUCuuuGGUUCUGuGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 118760 0.66 0.983193
Target:  5'- aCGCGCGGuu-----GugGCGCGCGGu -3'
miRNA:   3'- gGCGCGUCuuugguuCugUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 87429 0.66 0.983193
Target:  5'- gCCGCGCucGAAgaGCUGcuGCGCGCGCu- -3'
miRNA:   3'- -GGCGCGu-CUU--UGGUucUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 29623 0.66 0.982997
Target:  5'- -gGUGgAGGAcaugaggGCCGGGGCGC-CGCGGg -3'
miRNA:   3'- ggCGCgUCUU-------UGGUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 48431 0.66 0.982599
Target:  5'- gCCGCGUGGAGuugagcaccagcACCGagggcgugaaggugAGGCaaaaGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU------------UGGU--------------UCUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 38129 0.66 0.98115
Target:  5'- gUGCGcCGGgcACCGAGuCuuCGCGCGGc -3'
miRNA:   3'- gGCGC-GUCuuUGGUUCuGu-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 92846 0.66 0.982997
Target:  5'- gCCGcCGUAGAAAUUugguucgAGGACGuggcgcCGCGCGAg -3'
miRNA:   3'- -GGC-GCGUCUUUGG-------UUCUGU------GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 126888 0.66 0.982599
Target:  5'- gUCaCGCAGGAACCGcucguugcugccgcAGGCcaGCGCGUGGc -3'
miRNA:   3'- -GGcGCGUCUUUGGU--------------UCUG--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 3910 0.66 0.981988
Target:  5'- gCCaGCGCGGgcGCCGGuugcgcgcccgcgcuGGCGC-CGCGGc -3'
miRNA:   3'- -GG-CGCGUCuuUGGUU---------------CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 124020 0.66 0.981988
Target:  5'- gCCGCGUccaAGAAGCCGuccuccagcgccacGACGC-CGUGGu -3'
miRNA:   3'- -GGCGCG---UCUUUGGUu-------------CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 46945 0.66 0.982997
Target:  5'- gCCGCGUgcggcgaagccaAGGAGCCGgccccacuuugggAGGCGCAgGCu- -3'
miRNA:   3'- -GGCGCG------------UCUUUGGU-------------UCUGUGUgCGcu -5'
6500 3' -52.4 NC_001847.1 + 92579 0.67 0.968064
Target:  5'- aCCGCGCc---GCCGAGGaGgACGCGGc -3'
miRNA:   3'- -GGCGCGucuuUGGUUCUgUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 34229 0.67 0.968064
Target:  5'- aCGCGCuGcAGGCCcAGuACGCGgCGCGGc -3'
miRNA:   3'- gGCGCGuC-UUUGGuUC-UGUGU-GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 81001 0.67 0.968064
Target:  5'- aCGCGCuGcuGGACCAGGaggaGCGCAUggGCGAc -3'
miRNA:   3'- gGCGCGuC--UUUGGUUC----UGUGUG--CGCU- -5'
6500 3' -52.4 NC_001847.1 + 97804 0.67 0.968064
Target:  5'- aCCGcCGCAuGAccgcacGCCAGcgcugugcucGGCGCGCGCGGg -3'
miRNA:   3'- -GGC-GCGU-CUu-----UGGUU----------CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 72552 0.67 0.967433
Target:  5'- aCGCGCucuuugccuGCCcGGACcaccuGCACGCGAu -3'
miRNA:   3'- gGCGCGucuu-----UGGuUCUG-----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 41360 0.67 0.968064
Target:  5'- aCGCGCuugcgcGCCGAGAgCGCACGUc- -3'
miRNA:   3'- gGCGCGucuu--UGGUUCU-GUGUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.