miRNA display CGI


Results 161 - 180 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 72410 0.67 0.953722
Target:  5'- cCCGaCGCGGGgacGGCCAcGGCcGCaACGCGGa -3'
miRNA:   3'- -GGC-GCGUCU---UUGGUuCUG-UG-UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 50697 0.67 0.953722
Target:  5'- cUCGCGCGacGACC--GGCACGCGUGc -3'
miRNA:   3'- -GGCGCGUcuUUGGuuCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 28850 0.67 0.953722
Target:  5'- aCGCGCG---GCC---GCGCGCGCGAc -3'
miRNA:   3'- gGCGCGUcuuUGGuucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 85743 0.67 0.953722
Target:  5'- gCUGCGCGGAGcccGCCAuGACGgcaACGCc- -3'
miRNA:   3'- -GGCGCGUCUU---UGGUuCUGUg--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 52700 0.67 0.953722
Target:  5'- gCCGCGCcuGGAGCCAAG-CGCcC-CGAc -3'
miRNA:   3'- -GGCGCGu-CUUUGGUUCuGUGuGcGCU- -5'
6500 3' -52.4 NC_001847.1 + 97804 0.67 0.968064
Target:  5'- aCCGcCGCAuGAccgcacGCCAGcgcugugcucGGCGCGCGCGGg -3'
miRNA:   3'- -GGC-GCGU-CUu-----UGGUU----------CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 74682 0.67 0.953722
Target:  5'- gCCGCgGCAGGAcggcggccggcGCUuuugccuguacGGGGCGCugGCGGc -3'
miRNA:   3'- -GGCG-CGUCUU-----------UGG-----------UUCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 94955 0.67 0.952496
Target:  5'- gCCGCauuaccaacuacucGCAGAgccgcGACCAGGACgcccagucaccGCACuGCGAa -3'
miRNA:   3'- -GGCG--------------CGUCU-----UUGGUUCUG-----------UGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 35996 0.67 0.952496
Target:  5'- gCCGCGCugcaGGcgGCCGcgggcguggugcugGGGCuGCGCGCGGa -3'
miRNA:   3'- -GGCGCG----UCuuUGGU--------------UCUG-UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 74329 0.67 0.957655
Target:  5'- aCgGUGCcGcuGCCGcAGGCGCGCGCGc -3'
miRNA:   3'- -GgCGCGuCuuUGGU-UCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 24063 0.67 0.953722
Target:  5'- cUCGCGCAGccGGGCCcAGGC-C-CGCGGc -3'
miRNA:   3'- -GGCGCGUC--UUUGGuUCUGuGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 32548 0.67 0.961352
Target:  5'- gCGCGCAGc--CCucGGCGCugGgCGAc -3'
miRNA:   3'- gGCGCGUCuuuGGuuCUGUGugC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 22082 0.67 0.961352
Target:  5'- uUGCGCAGAcgugcGCC--GACGCGCuGCGGc -3'
miRNA:   3'- gGCGCGUCUu----UGGuuCUGUGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 10926 0.67 0.961352
Target:  5'- aCCGCGaGGcGAGCC--GGCugGCGCGGc -3'
miRNA:   3'- -GGCGCgUC-UUUGGuuCUGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 7742 0.67 0.961352
Target:  5'- -gGCGCGGAGgcggcgGCCAGGGCAaGCcCGAc -3'
miRNA:   3'- ggCGCGUCUU------UGGUUCUGUgUGcGCU- -5'
6500 3' -52.4 NC_001847.1 + 35631 0.67 0.961352
Target:  5'- gCgGCGCuGggGCCAgcgcuGGAC-CGCGCc- -3'
miRNA:   3'- -GgCGCGuCuuUGGU-----UCUGuGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 34161 0.67 0.961352
Target:  5'- gCUGCGCgAGGcGGCUGAGGCGC-UGCGGg -3'
miRNA:   3'- -GGCGCG-UCU-UUGGUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 60951 0.67 0.960268
Target:  5'- gCGCGCAGAGGaacgUCAGGuuggcguccccgcuGCGCGCGCc- -3'
miRNA:   3'- gGCGCGUCUUU----GGUUC--------------UGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 106088 0.67 0.957655
Target:  5'- gCCGCGCGGccGgCGAG-CACgGCGCGc -3'
miRNA:   3'- -GGCGCGUCuuUgGUUCuGUG-UGCGCu -5'
6500 3' -52.4 NC_001847.1 + 46768 0.67 0.957655
Target:  5'- gCCGCGC-GggGCCGGucCGC-CGCGc -3'
miRNA:   3'- -GGCGCGuCuuUGGUUcuGUGuGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.