miRNA display CGI


Results 61 - 80 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 32211 0.75 0.615457
Target:  5'- aCCGCgGCcuuGGAcGCCGuccAGGCGCACGCGGc -3'
miRNA:   3'- -GGCG-CG---UCUuUGGU---UCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 70449 0.75 0.657351
Target:  5'- gCCGCGCcuGAcgcACUgcGACACGCGCGGg -3'
miRNA:   3'- -GGCGCGu-CUu--UGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 112307 0.75 0.604995
Target:  5'- aCCGCGCcGGugGACCAGGGCgACAuUGCGAg -3'
miRNA:   3'- -GGCGCGuCU--UUGGUUCUG-UGU-GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 118833 0.75 0.646887
Target:  5'- -gGCGCGG-AGCCgAGGGCGCgaGCGCGAg -3'
miRNA:   3'- ggCGCGUCuUUGG-UUCUGUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 77578 0.75 0.657351
Target:  5'- gCCGCGCGG--GCCGAGcuCGCACgGCGGc -3'
miRNA:   3'- -GGCGCGUCuuUGGUUCu-GUGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 75768 0.74 0.708144
Target:  5'- gCCGCGCGGGugaacacGGCCGcGGGCucggcgcgGCGCGCGAc -3'
miRNA:   3'- -GGCGCGUCU-------UUGGU-UCUG--------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 98283 0.74 0.667794
Target:  5'- cCCGCGUAGAGcucggccgccGCCGAG-CGCACGUc- -3'
miRNA:   3'- -GGCGCGUCUU----------UGGUUCuGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 32794 0.74 0.709167
Target:  5'- aCGCGC-GAGuCCGAGcgcucuuugaGCGCGCGCGAg -3'
miRNA:   3'- gGCGCGuCUUuGGUUC----------UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 43782 0.74 0.698902
Target:  5'- gCGCGUAG-AGCCGAGcACGgGCGCGc -3'
miRNA:   3'- gGCGCGUCuUUGGUUC-UGUgUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 19527 0.74 0.708144
Target:  5'- uUGCgGCAGAAAcggcagccggacuCCAAGcCGCACGCGAu -3'
miRNA:   3'- gGCG-CGUCUUU-------------GGUUCuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 54388 0.74 0.709167
Target:  5'- uCCGCGCcGGcgcgGACCAAGuccACgACGCGCGAc -3'
miRNA:   3'- -GGCGCGuCU----UUGGUUC---UG-UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 56957 0.74 0.678206
Target:  5'- gCCGCG-AGAAGCCu--ACGCACGCGu -3'
miRNA:   3'- -GGCGCgUCUUUGGuucUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 82345 0.74 0.698902
Target:  5'- gUGCGCGGc-GCCAGGGCGCACuGCa- -3'
miRNA:   3'- gGCGCGUCuuUGGUUCUGUGUG-CGcu -5'
6500 3' -52.4 NC_001847.1 + 36418 0.74 0.69478
Target:  5'- gCGCGCAGAcccugcgacgcgcGCCGuagcGGCGCGCGCGGc -3'
miRNA:   3'- gGCGCGUCUu------------UGGUu---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 82879 0.74 0.688579
Target:  5'- cCCGUGCGGGcgcgccgcAGCCAAGccGCGgCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCU--------UUGGUUC--UGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 103583 0.74 0.709167
Target:  5'- aCGCGUAGAgGGCCcucgGGGGCauGCGCGCGAc -3'
miRNA:   3'- gGCGCGUCU-UUGG----UUCUG--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 71953 0.74 0.667794
Target:  5'- gCGCGCGGGcucGGCCAuGGCGCGCgaccGCGAc -3'
miRNA:   3'- gGCGCGUCU---UUGGUuCUGUGUG----CGCU- -5'
6500 3' -52.4 NC_001847.1 + 32992 0.74 0.667794
Target:  5'- gCGgGCAGGgcggccggagcGGCCGGGGgGCGCGCGGg -3'
miRNA:   3'- gGCgCGUCU-----------UUGGUUCUgUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 130847 0.74 0.678206
Target:  5'- gCGCGC-GAGuACCAAGGCGCcgGCGCGc -3'
miRNA:   3'- gGCGCGuCUU-UGGUUCUGUG--UGCGCu -5'
6500 3' -52.4 NC_001847.1 + 77106 0.74 0.677167
Target:  5'- gCGCGCGGuAGCggcggggcugcuuCAAGGCGCGCGCGc -3'
miRNA:   3'- gGCGCGUCuUUG-------------GUUCUGUGUGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.