miRNA display CGI


Results 81 - 100 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 33675 0.74 0.678206
Target:  5'- cCCGCGCGGGGcuaGAGGCGCAgGCGc -3'
miRNA:   3'- -GGCGCGUCUUuggUUCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 77106 0.74 0.677167
Target:  5'- gCGCGCGGuAGCggcggggcugcuuCAAGGCGCGCGCGc -3'
miRNA:   3'- gGCGCGUCuUUG-------------GUUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 33632 0.74 0.667794
Target:  5'- -gGCGCGGcggcuGACCGcgAGGCGCGCGCGc -3'
miRNA:   3'- ggCGCGUCu----UUGGU--UCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 130847 0.74 0.678206
Target:  5'- gCGCGC-GAGuACCAAGGCGCcgGCGCGc -3'
miRNA:   3'- gGCGCGuCUU-UGGUUCUGUG--UGCGCu -5'
6500 3' -52.4 NC_001847.1 + 46870 0.74 0.698902
Target:  5'- gCCaGUGCA-AAGCCGGGACGCGUGCGAg -3'
miRNA:   3'- -GG-CGCGUcUUUGGUUCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 56957 0.74 0.678206
Target:  5'- gCCGCG-AGAAGCCu--ACGCACGCGu -3'
miRNA:   3'- -GGCGCgUCUUUGGuucUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 34675 0.74 0.678206
Target:  5'- gCCGCGCAGcgGCaggagGAGcGCugGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGg----UUC-UGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 103583 0.74 0.709167
Target:  5'- aCGCGUAGAgGGCCcucgGGGGCauGCGCGCGAc -3'
miRNA:   3'- gGCGCGUCU-UUGG----UUCUG--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 38019 0.73 0.749443
Target:  5'- cUCGCGCGGguGCUGuGGGCGCGCGCc- -3'
miRNA:   3'- -GGCGCGUCuuUGGU-UCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 40155 0.73 0.749443
Target:  5'- gCGCGCAGcugcgccaAAGCCGcggGGGCuGCGCGCGGc -3'
miRNA:   3'- gGCGCGUC--------UUUGGU---UCUG-UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 6683 0.73 0.759267
Target:  5'- gCCGCgGCGGccGGCC-GGGCGCGCGCGc -3'
miRNA:   3'- -GGCG-CGUCu-UUGGuUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 63761 0.73 0.759267
Target:  5'- gCgGCGCGGGccaGGCCcgGAGAC-CGCGCGGa -3'
miRNA:   3'- -GgCGCGUCU---UUGG--UUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 63450 0.73 0.749443
Target:  5'- aCCGCGCAGAcGC--GGACGCG-GCGGg -3'
miRNA:   3'- -GGCGCGUCUuUGguUCUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 52310 0.73 0.748455
Target:  5'- -gGCGCGGGcggcgccAACCGGGACaACACGCu- -3'
miRNA:   3'- ggCGCGUCU-------UUGGUUCUG-UGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 34587 0.73 0.719364
Target:  5'- cCUGCGCA-AGGCCcGGGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcUUUGGuUCUGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 104374 0.73 0.729482
Target:  5'- aCGCGCcgcGAGGCCAGcacGGCGCGCGCc- -3'
miRNA:   3'- gGCGCGu--CUUUGGUU---CUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 129971 0.73 0.729482
Target:  5'- cCCGCGCcgcGGuaAAACaaaaaaAAGGCACGCGCGGu -3'
miRNA:   3'- -GGCGCG---UC--UUUGg-----UUCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 123560 0.73 0.739511
Target:  5'- gCCaGCGCAGAAGCaaccGGCAC-CGCGGc -3'
miRNA:   3'- -GG-CGCGUCUUUGguu-CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 34027 0.73 0.746475
Target:  5'- aCCGCGCuG-GGCCAGGcgaugggccccgcgGCGCGCGCGu -3'
miRNA:   3'- -GGCGCGuCuUUGGUUC--------------UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 51420 0.73 0.749443
Target:  5'- gCgGCGCAGAcggAGCCGcc-CGCGCGCGAc -3'
miRNA:   3'- -GgCGCGUCU---UUGGUucuGUGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.