Results 101 - 120 of 777 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 52310 | 0.73 | 0.748455 |
Target: 5'- -gGCGCGGGcggcgccAACCGGGACaACACGCu- -3' miRNA: 3'- ggCGCGUCU-------UUGGUUCUG-UGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 51420 | 0.73 | 0.749443 |
Target: 5'- gCgGCGCAGAcggAGCCGcc-CGCGCGCGAc -3' miRNA: 3'- -GgCGCGUCU---UUGGUucuGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 38019 | 0.73 | 0.749443 |
Target: 5'- cUCGCGCGGguGCUGuGGGCGCGCGCc- -3' miRNA: 3'- -GGCGCGUCuuUGGU-UCUGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 63450 | 0.73 | 0.749443 |
Target: 5'- aCCGCGCAGAcGC--GGACGCG-GCGGg -3' miRNA: 3'- -GGCGCGUCUuUGguUCUGUGUgCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 63761 | 0.73 | 0.759267 |
Target: 5'- gCgGCGCGGGccaGGCCcgGAGAC-CGCGCGGa -3' miRNA: 3'- -GgCGCGUCU---UUGG--UUCUGuGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 6683 | 0.73 | 0.759267 |
Target: 5'- gCCGCgGCGGccGGCC-GGGCGCGCGCGc -3' miRNA: 3'- -GGCG-CGUCu-UUGGuUCUGUGUGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 52912 | 0.73 | 0.749443 |
Target: 5'- uCCGCggGCAGcgGCuCGGGGCGCcCGCGAa -3' miRNA: 3'- -GGCG--CGUCuuUG-GUUCUGUGuGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 123560 | 0.73 | 0.739511 |
Target: 5'- gCCaGCGCAGAAGCaaccGGCAC-CGCGGc -3' miRNA: 3'- -GG-CGCGUCUUUGguu-CUGUGuGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 16327 | 0.73 | 0.739511 |
Target: 5'- uCCGCGCccuAGAcGACCGgcacggccuggAGGCGCugGCGGc -3' miRNA: 3'- -GGCGCG---UCU-UUGGU-----------UCUGUGugCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 129971 | 0.73 | 0.729482 |
Target: 5'- cCCGCGCcgcGGuaAAACaaaaaaAAGGCACGCGCGGu -3' miRNA: 3'- -GGCGCG---UC--UUUGg-----UUCUGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 94189 | 0.73 | 0.729482 |
Target: 5'- cUCGCGCGGGcaguUCGAGGCgcuGCGCGCGGc -3' miRNA: 3'- -GGCGCGUCUuu--GGUUCUG---UGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 30728 | 0.73 | 0.719364 |
Target: 5'- cCCGCGCGGAcguGGCCGacuGGGCGgGCGUa- -3' miRNA: 3'- -GGCGCGUCU---UUGGU---UCUGUgUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 46452 | 0.72 | 0.768972 |
Target: 5'- gCGCGCAGcgccGCCAGGGCACuuACGUa- -3' miRNA: 3'- gGCGCGUCuu--UGGUUCUGUG--UGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 135023 | 0.72 | 0.77855 |
Target: 5'- cCCGCGgGcGggGCCGGGGCGCgggGCGCc- -3' miRNA: 3'- -GGCGCgU-CuuUGGUUCUGUG---UGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 132206 | 0.72 | 0.768972 |
Target: 5'- gCCGCGCuGGAGGCgGccGCGCugGCGGc -3' miRNA: 3'- -GGCGCG-UCUUUGgUucUGUGugCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 63025 | 0.72 | 0.768972 |
Target: 5'- gCCGCGCGcGAAgGCCGGGAC-CACgGCGu -3' miRNA: 3'- -GGCGCGU-CUU-UGGUUCUGuGUG-CGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 109344 | 0.72 | 0.768972 |
Target: 5'- aCGCgGCGGAgcAGCuCGAGGCcgaGCACGCGGa -3' miRNA: 3'- gGCG-CGUCU--UUG-GUUCUG---UGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 29393 | 0.72 | 0.768972 |
Target: 5'- gCCGCGCuGGAGGCgGccGCGCugGCGGc -3' miRNA: 3'- -GGCGCG-UCUUUGgUucUGUGugCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 10837 | 0.72 | 0.77855 |
Target: 5'- cCUGCGCGcGAcggcggcgcguGGCCGAGGCGCggcggGCGCGGg -3' miRNA: 3'- -GGCGCGU-CU-----------UUGGUUCUGUG-----UGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 108365 | 0.72 | 0.768972 |
Target: 5'- gCGCGCAGGA----GGGCGCGCGCa- -3' miRNA: 3'- gGCGCGUCUUugguUCUGUGUGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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