miRNA display CGI


Results 141 - 160 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 28435 0.72 0.77855
Target:  5'- cCCGCGCuGGcuacGCCGcGGCGcCGCGCGAc -3'
miRNA:   3'- -GGCGCGuCUu---UGGUuCUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 41360 0.72 0.785173
Target:  5'- gCCGCGCGGAAccagccaagcggcgGCCGGGcCGCcgccggcagccGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU--------------UGGUUCuGUG-----------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 130134 0.72 0.787053
Target:  5'- cUCGCGCGcGAGGgCGAGGCGCAauacagcUGCGAg -3'
miRNA:   3'- -GGCGCGU-CUUUgGUUCUGUGU-------GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 101025 0.72 0.78799
Target:  5'- aCCGCgGCAGgcGCCGcAGGCuccgccgcCGCGCGAg -3'
miRNA:   3'- -GGCG-CGUCuuUGGU-UCUGu-------GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 30103 0.72 0.78799
Target:  5'- cCCGCGCccagcGCCGcGGCGCugGCGGc -3'
miRNA:   3'- -GGCGCGucuu-UGGUuCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 96628 0.72 0.78799
Target:  5'- gUGCGCGGggGCCGgcgGGuACGCgucguGCGCGGg -3'
miRNA:   3'- gGCGCGUCuuUGGU---UC-UGUG-----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 109344 0.72 0.768972
Target:  5'- aCGCgGCGGAgcAGCuCGAGGCcgaGCACGCGGa -3'
miRNA:   3'- gGCG-CGUCU--UUG-GUUCUG---UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29393 0.72 0.768972
Target:  5'- gCCGCGCuGGAGGCgGccGCGCugGCGGc -3'
miRNA:   3'- -GGCGCG-UCUUUGgUucUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 108365 0.72 0.768972
Target:  5'- gCGCGCAGGA----GGGCGCGCGCa- -3'
miRNA:   3'- gGCGCGUCUUugguUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 36240 0.72 0.796361
Target:  5'- aCGCGCAGGuugccgagcucccGGCCugggccgcccAGGCGCACGCGc -3'
miRNA:   3'- gGCGCGUCU-------------UUGGu---------UCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 16704 0.72 0.797283
Target:  5'- gCCGCcaccaGCAGGAgccccacggcGCCGAGAcCGCAgGCGAc -3'
miRNA:   3'- -GGCG-----CGUCUU----------UGGUUCU-GUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 33524 0.72 0.797283
Target:  5'- gCCGcCGCGGAGGCgCcGGGCGCGgGCGc -3'
miRNA:   3'- -GGC-GCGUCUUUG-GuUCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 33846 0.72 0.797283
Target:  5'- gCGCGCAGAGcGCagAGGACuGCGCGCGc -3'
miRNA:   3'- gGCGCGUCUU-UGg-UUCUG-UGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 103987 0.72 0.797283
Target:  5'- gCCGCGCAGAAgGCCAc--CGC-CGCGGc -3'
miRNA:   3'- -GGCGCGUCUU-UGGUucuGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 129236 0.72 0.797283
Target:  5'- uCCGCcuaGCGGcuGCCAGaccaACGCGCGCGAg -3'
miRNA:   3'- -GGCG---CGUCuuUGGUUc---UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 133624 0.72 0.797283
Target:  5'- uUCGCGCGc--GCCGAGGCcgccuACGCGCGGc -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUG-----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 87067 0.72 0.797283
Target:  5'- uCCGCGCGGcGugcgcccccGCCuuucgcGGCGCGCGCGGa -3'
miRNA:   3'- -GGCGCGUCuU---------UGGuu----CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 49496 0.72 0.80642
Target:  5'- gCCGCGCc-AAACCu-GACGCGCGCc- -3'
miRNA:   3'- -GGCGCGucUUUGGuuCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 93799 0.72 0.810029
Target:  5'- uCCGCGCGGccgcgcGGCCGAGuccccgcuggacuuuGCGcCGCGCGAg -3'
miRNA:   3'- -GGCGCGUCu-----UUGGUUC---------------UGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 7421 0.72 0.77855
Target:  5'- aCGCgGCGGcuuGCCAAGGCGCagucgcuaGCGCGGa -3'
miRNA:   3'- gGCG-CGUCuu-UGGUUCUGUG--------UGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.