miRNA display CGI


Results 101 - 120 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 123560 0.73 0.739511
Target:  5'- gCCaGCGCAGAAGCaaccGGCAC-CGCGGc -3'
miRNA:   3'- -GG-CGCGUCUUUGguu-CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 34027 0.73 0.746475
Target:  5'- aCCGCGCuG-GGCCAGGcgaugggccccgcgGCGCGCGCGu -3'
miRNA:   3'- -GGCGCGuCuUUGGUUC--------------UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 52310 0.73 0.748455
Target:  5'- -gGCGCGGGcggcgccAACCGGGACaACACGCu- -3'
miRNA:   3'- ggCGCGUCU-------UUGGUUCUG-UGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 63450 0.73 0.749443
Target:  5'- aCCGCGCAGAcGC--GGACGCG-GCGGg -3'
miRNA:   3'- -GGCGCGUCUuUGguUCUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 52912 0.73 0.749443
Target:  5'- uCCGCggGCAGcgGCuCGGGGCGCcCGCGAa -3'
miRNA:   3'- -GGCG--CGUCuuUG-GUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 51420 0.73 0.749443
Target:  5'- gCgGCGCAGAcggAGCCGcc-CGCGCGCGAc -3'
miRNA:   3'- -GgCGCGUCU---UUGGUucuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 38019 0.73 0.749443
Target:  5'- cUCGCGCGGguGCUGuGGGCGCGCGCc- -3'
miRNA:   3'- -GGCGCGUCuuUGGU-UCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 40155 0.73 0.749443
Target:  5'- gCGCGCAGcugcgccaAAGCCGcggGGGCuGCGCGCGGc -3'
miRNA:   3'- gGCGCGUC--------UUUGGU---UCUG-UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 117903 0.73 0.759267
Target:  5'- aCCcCGUGGAGGCUcGGcACGCGCGCGAc -3'
miRNA:   3'- -GGcGCGUCUUUGGuUC-UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 114126 0.73 0.759267
Target:  5'- uCUGCGCAGGGucGCCcgcacAGcCGCGCGCGGu -3'
miRNA:   3'- -GGCGCGUCUU--UGGu----UCuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 6683 0.73 0.759267
Target:  5'- gCCGCgGCGGccGGCC-GGGCGCGCGCGc -3'
miRNA:   3'- -GGCG-CGUCu-UUGGuUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 63761 0.73 0.759267
Target:  5'- gCgGCGCGGGccaGGCCcgGAGAC-CGCGCGGa -3'
miRNA:   3'- -GgCGCGUCU---UUGG--UUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 63025 0.72 0.768972
Target:  5'- gCCGCGCGcGAAgGCCGGGAC-CACgGCGu -3'
miRNA:   3'- -GGCGCGU-CUU-UGGUUCUGuGUG-CGCu -5'
6500 3' -52.4 NC_001847.1 + 132206 0.72 0.768972
Target:  5'- gCCGCGCuGGAGGCgGccGCGCugGCGGc -3'
miRNA:   3'- -GGCGCG-UCUUUGgUucUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 3724 0.72 0.768972
Target:  5'- gCGCGCGccGGCCAcGGcGCGCACGCGGc -3'
miRNA:   3'- gGCGCGUcuUUGGU-UC-UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 109344 0.72 0.768972
Target:  5'- aCGCgGCGGAgcAGCuCGAGGCcgaGCACGCGGa -3'
miRNA:   3'- gGCG-CGUCU--UUG-GUUCUG---UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 108365 0.72 0.768972
Target:  5'- gCGCGCAGGA----GGGCGCGCGCa- -3'
miRNA:   3'- gGCGCGUCUUugguUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 46452 0.72 0.768972
Target:  5'- gCGCGCAGcgccGCCAGGGCACuuACGUa- -3'
miRNA:   3'- gGCGCGUCuu--UGGUUCUGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 29393 0.72 0.768972
Target:  5'- gCCGCGCuGGAGGCgGccGCGCugGCGGc -3'
miRNA:   3'- -GGCGCG-UCUUUGgUucUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 59861 0.72 0.768972
Target:  5'- -gGCGCGGucGCCgAGGGCcgGCGCGCGGc -3'
miRNA:   3'- ggCGCGUCuuUGG-UUCUG--UGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.