miRNA display CGI


Results 121 - 140 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 7421 0.72 0.77855
Target:  5'- aCGCgGCGGcuuGCCAAGGCGCagucgcuaGCGCGGa -3'
miRNA:   3'- gGCG-CGUCuu-UGGUUCUGUG--------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 135023 0.72 0.77855
Target:  5'- cCCGCGgGcGggGCCGGGGCGCgggGCGCc- -3'
miRNA:   3'- -GGCGCgU-CuuUGGUUCUGUG---UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 131248 0.72 0.77855
Target:  5'- cCCGCGCuGGcuacGCCGcGGCGcCGCGCGAc -3'
miRNA:   3'- -GGCGCGuCUu---UGGUuCUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 28435 0.72 0.77855
Target:  5'- cCCGCGCuGGcuacGCCGcGGCGcCGCGCGAc -3'
miRNA:   3'- -GGCGCGuCUu---UGGUuCUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 128801 0.72 0.77855
Target:  5'- gCgGCGCGGuugccGCCGGGGCACcCGCGu -3'
miRNA:   3'- -GgCGCGUCuu---UGGUUCUGUGuGCGCu -5'
6500 3' -52.4 NC_001847.1 + 32210 0.72 0.77855
Target:  5'- cCCGCGgGcGggGCCGGGGCGCgggGCGCc- -3'
miRNA:   3'- -GGCGCgU-CuuUGGUUCUGUG---UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 131423 0.72 0.77855
Target:  5'- gCGCGCcGugGCC--GGCGCGCGCGAu -3'
miRNA:   3'- gGCGCGuCuuUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 53824 0.72 0.77855
Target:  5'- gCGCGCcGGAGCgGGGGCGCugaagagccgGCGCGGg -3'
miRNA:   3'- gGCGCGuCUUUGgUUCUGUG----------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 10837 0.72 0.77855
Target:  5'- cCUGCGCGcGAcggcggcgcguGGCCGAGGCGCggcggGCGCGGg -3'
miRNA:   3'- -GGCGCGU-CU-----------UUGGUUCUGUG-----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 41360 0.72 0.785173
Target:  5'- gCCGCGCGGAAccagccaagcggcgGCCGGGcCGCcgccggcagccGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU--------------UGGUUCuGUG-----------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 130134 0.72 0.787053
Target:  5'- cUCGCGCGcGAGGgCGAGGCGCAauacagcUGCGAg -3'
miRNA:   3'- -GGCGCGU-CUUUgGUUCUGUGU-------GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 66059 0.72 0.78799
Target:  5'- uCCGCGCGcGgcGCC-AGACGCG-GCGAg -3'
miRNA:   3'- -GGCGCGU-CuuUGGuUCUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 30103 0.72 0.78799
Target:  5'- cCCGCGCccagcGCCGcGGCGCugGCGGc -3'
miRNA:   3'- -GGCGCGucuu-UGGUuCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 76428 0.72 0.78799
Target:  5'- cCCGCgGCGGGAGC----GCGCGCGCGGa -3'
miRNA:   3'- -GGCG-CGUCUUUGguucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 132916 0.72 0.78799
Target:  5'- cCCGCGCccagcGCCGcGGCGCugGCGGc -3'
miRNA:   3'- -GGCGCGucuu-UGGUuCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 96628 0.72 0.78799
Target:  5'- gUGCGCGGggGCCGgcgGGuACGCgucguGCGCGGg -3'
miRNA:   3'- gGCGCGUCuuUGGU---UC-UGUG-----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 101025 0.72 0.78799
Target:  5'- aCCGCgGCAGgcGCCGcAGGCuccgccgcCGCGCGAg -3'
miRNA:   3'- -GGCG-CGUCuuUGGU-UCUGu-------GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36240 0.72 0.796361
Target:  5'- aCGCGCAGGuugccgagcucccGGCCugggccgcccAGGCGCACGCGc -3'
miRNA:   3'- gGCGCGUCU-------------UUGGu---------UCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 18584 0.72 0.797283
Target:  5'- gCCGCGCcaaAGucGCCcAGGCACACGUc- -3'
miRNA:   3'- -GGCGCG---UCuuUGGuUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 20322 0.72 0.797283
Target:  5'- aCCGCGCcGAGggaccauguaccGCCAGGGCACccccaaccGCGUGGu -3'
miRNA:   3'- -GGCGCGuCUU------------UGGUUCUGUG--------UGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.