miRNA display CGI


Results 141 - 160 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 133624 0.72 0.797283
Target:  5'- uUCGCGCGc--GCCGAGGCcgccuACGCGCGGc -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUG-----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 1174 0.72 0.797283
Target:  5'- gCCGCGCAGAAgGCCAc--CGC-CGCGGc -3'
miRNA:   3'- -GGCGCGUCUU-UGGUucuGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 18584 0.72 0.797283
Target:  5'- gCCGCGCcaaAGucGCCcAGGCACACGUc- -3'
miRNA:   3'- -GGCGCG---UCuuUGGuUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 129236 0.72 0.797283
Target:  5'- uCCGCcuaGCGGcuGCCAGaccaACGCGCGCGAg -3'
miRNA:   3'- -GGCG---CGUCuuUGGUUc---UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 33846 0.72 0.797283
Target:  5'- gCGCGCAGAGcGCagAGGACuGCGCGCGc -3'
miRNA:   3'- gGCGCGUCUU-UGg-UUCUG-UGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 33524 0.72 0.797283
Target:  5'- gCCGcCGCGGAGGCgCcGGGCGCGgGCGc -3'
miRNA:   3'- -GGC-GCGUCUUUG-GuUCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 16704 0.72 0.797283
Target:  5'- gCCGCcaccaGCAGGAgccccacggcGCCGAGAcCGCAgGCGAc -3'
miRNA:   3'- -GGCG-----CGUCUU----------UGGUUCU-GUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 26423 0.72 0.797283
Target:  5'- uCCGCcuaGCGGcuGCCAGaccaACGCGCGCGAg -3'
miRNA:   3'- -GGCG---CGUCuuUGGUUc---UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 30811 0.72 0.797283
Target:  5'- uUCGCGCGc--GCCGAGGCcgccuACGCGCGGc -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUG-----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 102269 0.72 0.797283
Target:  5'- aCCGUGCccuccagcGCCAGGAucuCGCGCGCGAg -3'
miRNA:   3'- -GGCGCGucuu----UGGUUCU---GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 103987 0.72 0.797283
Target:  5'- gCCGCGCAGAAgGCCAc--CGC-CGCGGc -3'
miRNA:   3'- -GGCGCGUCUU-UGGUucuGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 20322 0.72 0.797283
Target:  5'- aCCGCGCcGAGggaccauguaccGCCAGGGCACccccaaccGCGUGGu -3'
miRNA:   3'- -GGCGCGuCUU------------UGGUUCUGUG--------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 71307 0.72 0.800957
Target:  5'- gCGCGCAGGAaagcgcacguguucACCAGGagcgcguaagcauuGCGCACaGCGAc -3'
miRNA:   3'- gGCGCGUCUU--------------UGGUUC--------------UGUGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 49496 0.72 0.80642
Target:  5'- gCCGCGCc-AAACCu-GACGCGCGCc- -3'
miRNA:   3'- -GGCGCGucUUUGGuuCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 62175 0.72 0.80642
Target:  5'- gCCGUGUAGcccacGCCGAGGucCACGCGCGc -3'
miRNA:   3'- -GGCGCGUCuu---UGGUUCU--GUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 14152 0.72 0.80642
Target:  5'- gCUGCGCAGcggcGGCCGGGGCGgcCGCGCu- -3'
miRNA:   3'- -GGCGCGUCu---UUGGUUCUGU--GUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 129567 0.72 0.80642
Target:  5'- aCCGCGCGGccACC-AGGCAUuugccguCGCGGa -3'
miRNA:   3'- -GGCGCGUCuuUGGuUCUGUGu------GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 73252 0.72 0.80642
Target:  5'- gCGCGCucGAGGCCGugcGCGCACGcCGAg -3'
miRNA:   3'- gGCGCGu-CUUUGGUuc-UGUGUGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 49416 0.72 0.80642
Target:  5'- uCCGCGCAGccuGCCGccguGCACugGCGc -3'
miRNA:   3'- -GGCGCGUCuu-UGGUuc--UGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 93799 0.72 0.810029
Target:  5'- uCCGCGCGGccgcgcGGCCGAGuccccgcuggacuuuGCGcCGCGCGAg -3'
miRNA:   3'- -GGCGCGUCu-----UUGGUUC---------------UGU-GUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.