miRNA display CGI


Results 121 - 140 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 124264 0.66 0.973903
Target:  5'- gCCGCagGCGGucuGCCuGGGCGCcCGCGc -3'
miRNA:   3'- -GGCG--CGUCuu-UGGuUCUGUGuGCGCu -5'
6500 3' -52.4 NC_001847.1 + 15072 0.66 0.973903
Target:  5'- cCCGCGCggcucggcAGGAGCCGGGGCuaggaGCAaaggggGCGGu -3'
miRNA:   3'- -GGCGCG--------UCUUUGGUUCUG-----UGUg-----CGCU- -5'
6500 3' -52.4 NC_001847.1 + 38423 0.66 0.973903
Target:  5'- gCCGCagggGCGGGAGcCCGAGGgGCGgGCa- -3'
miRNA:   3'- -GGCG----CGUCUUU-GGUUCUgUGUgCGcu -5'
6500 3' -52.4 NC_001847.1 + 50510 0.66 0.973903
Target:  5'- gCGCGCAGcAGCCGcGGCAUggccccgcucgaAgGCGAc -3'
miRNA:   3'- gGCGCGUCuUUGGUuCUGUG------------UgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 84109 0.66 0.973903
Target:  5'- aCCGUGUuuuGGAucgcAGCCAGaGCGC-CGCGAa -3'
miRNA:   3'- -GGCGCG---UCU----UUGGUUcUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 57439 0.66 0.973903
Target:  5'- gCGCGC----ACCAGcGCGCGCGCGc -3'
miRNA:   3'- gGCGCGucuuUGGUUcUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 116920 0.66 0.973903
Target:  5'- cCCGCGCgcacgaccgccgAGAGACCGccagcccgAGACcucgcCGCGCGu -3'
miRNA:   3'- -GGCGCG------------UCUUUGGU--------UCUGu----GUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 128678 0.66 0.973903
Target:  5'- gCCGUGCGGGAcuGCCu-GGC-CACGUa- -3'
miRNA:   3'- -GGCGCGUCUU--UGGuuCUGuGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 74658 0.66 0.973631
Target:  5'- cCCGCGCGcgcacaaagcggcGgcGCCAuggcGGACGCGCcCGAc -3'
miRNA:   3'- -GGCGCGU-------------CuuUGGU----UCUGUGUGcGCU- -5'
6500 3' -52.4 NC_001847.1 + 132353 0.66 0.973631
Target:  5'- gCCGCGCucgcggcccuGGAGGCCGccggcggGGGCGCcgGCGCc- -3'
miRNA:   3'- -GGCGCG----------UCUUUGGU-------UCUGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 132576 0.66 0.973631
Target:  5'- gCCGCGCAGgcGCCcgcgccgAAGACAgCcCGCc- -3'
miRNA:   3'- -GGCGCGUCuuUGG-------UUCUGU-GuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 29540 0.66 0.973631
Target:  5'- gCCGCGCucgcggcccuGGAGGCCGccggcggGGGCGCcgGCGCc- -3'
miRNA:   3'- -GGCGCG----------UCUUUGGU-------UCUGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 14959 0.66 0.973081
Target:  5'- cUCGCGCGGccacACCAccauccagagcaacAGGCACcgcauCGCGAg -3'
miRNA:   3'- -GGCGCGUCuu--UGGU--------------UCUGUGu----GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 10 0.66 0.972239
Target:  5'- cCCGCGCGGGGggcGCgGAGAaaaaaaaaauuuuuuC-CGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU---UGgUUCU---------------GuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 58687 0.66 0.971089
Target:  5'- -gGCgGCAGGcuGGCCAuGGCGCugGCa- -3'
miRNA:   3'- ggCG-CGUCU--UUGGUuCUGUGugCGcu -5'
6500 3' -52.4 NC_001847.1 + 91720 0.66 0.971089
Target:  5'- aCCGCGCGacgcGAGGCCcAGcugcagcgcccuGCGCGCGuCGGc -3'
miRNA:   3'- -GGCGCGU----CUUUGGuUC------------UGUGUGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 69350 0.66 0.971089
Target:  5'- gCgGCGCuGguGCU--GGCGCGCGCGGc -3'
miRNA:   3'- -GgCGCGuCuuUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 97155 0.66 0.971089
Target:  5'- cCCGgGCcuccccaaAGAcacuGCCGGcGCGCACGCGGg -3'
miRNA:   3'- -GGCgCG--------UCUu---UGGUUcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 90010 0.66 0.971089
Target:  5'- aCCcCGCAGAAggcGCCGAGcuGCACcuGCGCu- -3'
miRNA:   3'- -GGcGCGUCUU---UGGUUC--UGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 133551 0.66 0.971089
Target:  5'- gCCGCGCGcuGGcCCGAGcggcGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUU-GGUUC----UGUGugCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.