miRNA display CGI


Results 81 - 100 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 17116 0.7 0.865266
Target:  5'- -aGCGCucuGGAACCAGGAgACGuCGCa- -3'
miRNA:   3'- ggCGCGu--CUUUGGUUCUgUGU-GCGcu -5'
6500 3' -52.4 NC_001847.1 + 17266 0.67 0.96482
Target:  5'- gCCGUuGCGG-AACCAGuGCAgGCGCGu -3'
miRNA:   3'- -GGCG-CGUCuUUGGUUcUGUgUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 17556 0.67 0.968064
Target:  5'- cCCgGCGCAGAcguuuuGGCCGGGcaGCGCGCc- -3'
miRNA:   3'- -GG-CGCGUCU------UUGGUUCugUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 17660 0.7 0.865266
Target:  5'- aCGCGCuGAAACCAGaGCuccagGCGCGCa- -3'
miRNA:   3'- gGCGCGuCUUUGGUUcUG-----UGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 17704 0.68 0.940476
Target:  5'- uCCGCcauguccaAGAgGGCCAGGGCGCagccGCGCGAa -3'
miRNA:   3'- -GGCGcg------UCU-UUGGUUCUGUG----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 17810 0.66 0.978926
Target:  5'- gCGgGCGGGAgggcgccauGCCAGugcGGCGCACGuCGGc -3'
miRNA:   3'- gGCgCGUCUU---------UGGUU---CUGUGUGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 18122 0.71 0.849446
Target:  5'- uCCGCgGCGGu----GGGGCGCGCGCGAa -3'
miRNA:   3'- -GGCG-CGUCuuuggUUCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 18239 0.7 0.880204
Target:  5'- gCGCGCGGGuggauCCAAGAUgGC-CGCGAc -3'
miRNA:   3'- gGCGCGUCUuu---GGUUCUG-UGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 18431 0.69 0.925
Target:  5'- gCGCGCGGGuauGCCA--GCAUcucguACGCGAc -3'
miRNA:   3'- gGCGCGUCUu--UGGUucUGUG-----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 18453 0.66 0.976261
Target:  5'- gCCGUGCGGu-GCCGcgcccgcagcgccGGACccACACGCa- -3'
miRNA:   3'- -GGCGCGUCuuUGGU-------------UCUG--UGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 18482 0.66 0.98115
Target:  5'- uCCGUGCGGcAGUCGuaGCGCGCGCGc -3'
miRNA:   3'- -GGCGCGUCuUUGGUucUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 18505 0.69 0.91343
Target:  5'- gCC-CGCGGcuGCCGAGGCcaGCGCuGCGGg -3'
miRNA:   3'- -GGcGCGUCuuUGGUUCUG--UGUG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 18584 0.72 0.797283
Target:  5'- gCCGCGCcaaAGucGCCcAGGCACACGUc- -3'
miRNA:   3'- -GGCGCG---UCuuUGGuUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 18878 0.7 0.856671
Target:  5'- gCCaGCGUAGAGGCCGAGgccccgaucuugaGCACcacgugcuccuGCGCGGg -3'
miRNA:   3'- -GG-CGCGUCUUUGGUUC-------------UGUG-----------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 19121 0.66 0.98115
Target:  5'- gCGCGCAGugcACCGGcACAC-CGCa- -3'
miRNA:   3'- gGCGCGUCuu-UGGUUcUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 19471 0.68 0.935567
Target:  5'- cCCGCGCAGccGCuCAcccGCACggACGCGAa -3'
miRNA:   3'- -GGCGCGUCuuUG-GUuc-UGUG--UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 19527 0.74 0.708144
Target:  5'- uUGCgGCAGAAAcggcagccggacuCCAAGcCGCACGCGAu -3'
miRNA:   3'- gGCG-CGUCUUU-------------GGUUCuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 20322 0.72 0.797283
Target:  5'- aCCGCGCcGAGggaccauguaccGCCAGGGCACccccaaccGCGUGGu -3'
miRNA:   3'- -GGCGCGuCUU------------UGGUUCUGUG--------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 20433 0.68 0.949551
Target:  5'- aUGCGaggGGggGCUuGGugGCugGCGAc -3'
miRNA:   3'- gGCGCg--UCuuUGGuUCugUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 21294 0.71 0.848633
Target:  5'- aCCGCGgcauccaCGGGGACCGGcGCGCcACGCGGg -3'
miRNA:   3'- -GGCGC-------GUCUUUGGUUcUGUG-UGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.