miRNA display CGI


Results 121 - 140 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 26800 0.69 0.91934
Target:  5'- gCGcCGCAGAcgacGGCCGuGACGCugGCc- -3'
miRNA:   3'- gGC-GCGUCU----UUGGUuCUGUGugCGcu -5'
6500 3' -52.4 NC_001847.1 + 27000 0.68 0.930408
Target:  5'- gCgGCGCGGuuGCCGuacucggcGGCGCAgGCGGc -3'
miRNA:   3'- -GgCGCGUCuuUGGUu-------CUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 27158 0.73 0.729482
Target:  5'- cCCGCGCcgcGGuaAAACaaaaaaAAGGCACGCGCGGu -3'
miRNA:   3'- -GGCGCG---UC--UUUGg-----UUCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 27355 0.71 0.832801
Target:  5'- gCCGcCGCAGcc-CCAGcugcccccccGGCGCGCGCGAu -3'
miRNA:   3'- -GGC-GCGUCuuuGGUU----------CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 27519 0.69 0.907272
Target:  5'- gCCGCgGCGGcgGCgGGGACGCccgagaacggcgGCGCGGc -3'
miRNA:   3'- -GGCG-CGUCuuUGgUUCUGUG------------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 27788 0.66 0.974971
Target:  5'- aCUGCGCGGcgggugcgggcucuGGCCAuucgcgccccGGcGCACGCGCGGc -3'
miRNA:   3'- -GGCGCGUCu-------------UUGGU----------UC-UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 27793 0.7 0.894219
Target:  5'- gCCGgagaCGCGGggGCCAccgaGGGCGCcgaggccgaagACGCGGa -3'
miRNA:   3'- -GGC----GCGUCuuUGGU----UCUGUG-----------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 27866 0.66 0.973903
Target:  5'- aCGCGgGGGGcGCCgAGGACGCGgacguCGCGGa -3'
miRNA:   3'- gGCGCgUCUU-UGG-UUCUGUGU-----GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 27913 0.69 0.900867
Target:  5'- gCCGCGCuugcGGAGGCCAGGGCGgC-CGUc- -3'
miRNA:   3'- -GGCGCG----UCUUUGGUUCUGU-GuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 27926 0.7 0.883083
Target:  5'- gCGCGgAGGAcgcggacaggccuggGCCGcGGCGCGCGCGc -3'
miRNA:   3'- gGCGCgUCUU---------------UGGUuCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 27972 0.69 0.91934
Target:  5'- gUCGCGguGGAggcggccgcgGCCGGGGCGgAgGCGGc -3'
miRNA:   3'- -GGCGCguCUU----------UGGUUCUGUgUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 28032 0.71 0.815391
Target:  5'- gCCGcCGCcaucGAAGCCGAGGCGgGgGCGGc -3'
miRNA:   3'- -GGC-GCGu---CUUUGGUUCUGUgUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 28093 0.66 0.983193
Target:  5'- -gGCGCcugc-CCGGGGcCGCGCGCGAc -3'
miRNA:   3'- ggCGCGucuuuGGUUCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 28266 0.67 0.96482
Target:  5'- gCCGagGCuGAGGCCGGGACugGgGCc- -3'
miRNA:   3'- -GGCg-CGuCUUUGGUUCUGugUgCGcu -5'
6500 3' -52.4 NC_001847.1 + 28435 0.72 0.77855
Target:  5'- cCCGCGCuGGcuacGCCGcGGCGcCGCGCGAc -3'
miRNA:   3'- -GGCGCGuCUu---UGGUuCUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 28672 0.67 0.961352
Target:  5'- aCGCGgGGAAGCaguacgcGGCGCugGUGGa -3'
miRNA:   3'- gGCGCgUCUUUGguu----CUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 28795 0.68 0.949551
Target:  5'- gCGUGCAGGGcuGCCGGGGC-CACaGCu- -3'
miRNA:   3'- gGCGCGUCUU--UGGUUCUGuGUG-CGcu -5'
6500 3' -52.4 NC_001847.1 + 28850 0.67 0.953722
Target:  5'- aCGCGCG---GCC---GCGCGCGCGAc -3'
miRNA:   3'- gGCGCGUcuuUGGuucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 28875 0.7 0.857463
Target:  5'- gCCGCGCAGAAcgcGCUGuGGGCgcugccGCACGUGGc -3'
miRNA:   3'- -GGCGCGUCUU---UGGU-UCUG------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 28920 0.71 0.84039
Target:  5'- gCCGUGCAGGcgagcgccacgccGACCAagccguggAGACGCugGCc- -3'
miRNA:   3'- -GGCGCGUCU-------------UUGGU--------UCUGUGugCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.