miRNA display CGI


Results 141 - 160 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 29036 0.66 0.973903
Target:  5'- gCCGCGCuc--GCCGAGcUGCGCGCc- -3'
miRNA:   3'- -GGCGCGucuuUGGUUCuGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 29070 0.68 0.947814
Target:  5'- gCCGCGCGGcGccggcgccccugccGCCGgcgagcacggcgcGGGCGgCGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuU--------------UGGU-------------UCUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29260 0.68 0.935567
Target:  5'- gCCGCGCAcGGACUAcGugGCG-GCGAu -3'
miRNA:   3'- -GGCGCGUcUUUGGUuCugUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29299 0.66 0.970204
Target:  5'- -gGCgGCAGAGGCCGcggccgcGGACAagcgagccgcgaGCGCGAg -3'
miRNA:   3'- ggCG-CGUCUUUGGU-------UCUGUg-----------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29331 0.66 0.976513
Target:  5'- aCGCGguGGAGCgCGcgcGGCuccaGCGCGCGGc -3'
miRNA:   3'- gGCGCguCUUUG-GUu--CUG----UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29373 0.79 0.417604
Target:  5'- aCCGCGCGGcgGCCgGAGcugcCGCGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGG-UUCu---GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29393 0.72 0.768972
Target:  5'- gCCGCGCuGGAGGCgGccGCGCugGCGGc -3'
miRNA:   3'- -GGCGCG-UCUUUGgUucUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29459 0.67 0.961352
Target:  5'- cCCGCgGCcGAAgcgccgcccgcgGCCGAGGCGgCACGCu- -3'
miRNA:   3'- -GGCG-CGuCUU------------UGGUUCUGU-GUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 29469 0.78 0.473432
Target:  5'- cCCGCGCGucGGCCuGGGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUUGGuUCUGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 29540 0.66 0.973631
Target:  5'- gCCGCGCucgcggcccuGGAGGCCGccggcggGGGCGCcgGCGCc- -3'
miRNA:   3'- -GGCGCG----------UCUUUGGU-------UCUGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 29623 0.66 0.982997
Target:  5'- -gGUGgAGGAcaugaggGCCGGGGCGC-CGCGGg -3'
miRNA:   3'- ggCGCgUCUU-------UGGUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 30103 0.72 0.78799
Target:  5'- cCCGCGCccagcGCCGcGGCGCugGCGGc -3'
miRNA:   3'- -GGCGCGucuu-UGGUuCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 30114 0.68 0.949551
Target:  5'- gCCGgggcaGCAGAuGCUGGcGAUAUACGCGAc -3'
miRNA:   3'- -GGCg----CGUCUuUGGUU-CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 30177 0.66 0.978926
Target:  5'- gCGCucgGCGGAccuGGCCGAcgcggugcgcGGCGCGCGCGc -3'
miRNA:   3'- gGCG---CGUCU---UUGGUU----------CUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 30223 0.7 0.88733
Target:  5'- gCCGCGCGcgcccGGGCCGAGGUGCGCGUGu -3'
miRNA:   3'- -GGCGCGUc----UUUGGUUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 30245 0.7 0.894219
Target:  5'- gCCGCGCGGGccCCGcgGGGCGCuCGCc- -3'
miRNA:   3'- -GGCGCGUCUuuGGU--UCUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 30436 0.7 0.880204
Target:  5'- -gGCGCGGAGgcGCCGGGGCuGCACGaGGu -3'
miRNA:   3'- ggCGCGUCUU--UGGUUCUG-UGUGCgCU- -5'
6500 3' -52.4 NC_001847.1 + 30494 0.66 0.983193
Target:  5'- uCgGCGCGGc--CCucGGGCGCGCGCu- -3'
miRNA:   3'- -GgCGCGUCuuuGGu-UCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 30599 0.68 0.945136
Target:  5'- gCCGCGUAGcgGCCccGGGGCcgcCGCGCa- -3'
miRNA:   3'- -GGCGCGUCuuUGG--UUCUGu--GUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 30602 0.68 0.930408
Target:  5'- gCGCGCGGcuGGCCGcGGCGCG-GCGGc -3'
miRNA:   3'- gGCGCGUCu-UUGGUuCUGUGUgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.