miRNA display CGI


Results 61 - 80 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 128801 0.72 0.77855
Target:  5'- gCgGCGCGGuugccGCCGGGGCACcCGCGu -3'
miRNA:   3'- -GgCGCGUCuu---UGGUUCUGUGuGCGCu -5'
6500 3' -52.4 NC_001847.1 + 128785 0.7 0.872848
Target:  5'- gCCGCggGCGGucAGACCAGGGCggGCGgGCGGg -3'
miRNA:   3'- -GGCG--CGUC--UUUGGUUCUG--UGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 128678 0.66 0.973903
Target:  5'- gCCGUGCGGGAcuGCCu-GGC-CACGUa- -3'
miRNA:   3'- -GGCGCGUCUU--UGGuuCUGuGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 127287 0.67 0.964484
Target:  5'- gCCGCcucuGCAGgcGCCAccggcggugccggAGACACG-GCGAc -3'
miRNA:   3'- -GGCG----CGUCuuUGGU-------------UCUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 127202 0.66 0.983193
Target:  5'- -gGCGC-GAAcuCCGGcgcGGCGCGCGCGGg -3'
miRNA:   3'- ggCGCGuCUUu-GGUU---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 126918 0.67 0.96482
Target:  5'- -gGCGCGGGucCCAGGGCucGCACuCGGg -3'
miRNA:   3'- ggCGCGUCUuuGGUUCUG--UGUGcGCU- -5'
6500 3' -52.4 NC_001847.1 + 126888 0.66 0.982599
Target:  5'- gUCaCGCAGGAACCGcucguugcugccgcAGGCcaGCGCGUGGc -3'
miRNA:   3'- -GGcGCGUCUUUGGU--------------UCUG--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 126044 0.7 0.894219
Target:  5'- cCUGCGguGGcuCCGAGAgcggcacccCGCGCGCGu -3'
miRNA:   3'- -GGCGCguCUuuGGUUCU---------GUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 125440 0.66 0.98115
Target:  5'- cCCGCGCGuGGcuGGCCGgaGGACGgGCGgGu -3'
miRNA:   3'- -GGCGCGU-CU--UUGGU--UCUGUgUGCgCu -5'
6500 3' -52.4 NC_001847.1 + 125336 0.68 0.945136
Target:  5'- gCCGCGCuGAAcGCCAgcggccggccAGACGCAacaGCa- -3'
miRNA:   3'- -GGCGCGuCUU-UGGU----------UCUGUGUg--CGcu -5'
6500 3' -52.4 NC_001847.1 + 125290 0.66 0.976513
Target:  5'- gCCGuCGCAGGugGGgCAAGGCugGcCGUGGc -3'
miRNA:   3'- -GGC-GCGUCU--UUgGUUCUGugU-GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 125234 0.76 0.563436
Target:  5'- uCCGCggggGCGGGGcCCGAGAC-CACGCGGu -3'
miRNA:   3'- -GGCG----CGUCUUuGGUUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 125068 0.7 0.88733
Target:  5'- cCCGCGCGcggcGggGCgCuGGGCcCGCGCGGc -3'
miRNA:   3'- -GGCGCGU----CuuUG-GuUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 125051 0.68 0.930408
Target:  5'- cCCGUGUagccgagcaggaAGAAGCCGAcgaGCGCGCGGc -3'
miRNA:   3'- -GGCGCG------------UCUUUGGUUcugUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 124545 0.68 0.930408
Target:  5'- -gGCGCGGGccggcGCCGGcccGCGCGCGCGGg -3'
miRNA:   3'- ggCGCGUCUu----UGGUUc--UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 124323 0.69 0.900867
Target:  5'- gCGCGCAGguGCUGcaGCAgCGCGCGGc -3'
miRNA:   3'- gGCGCGUCuuUGGUucUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 124264 0.66 0.973903
Target:  5'- gCCGCagGCGGucuGCCuGGGCGCcCGCGc -3'
miRNA:   3'- -GGCG--CGUCuu-UGGuUCUGUGuGCGCu -5'
6500 3' -52.4 NC_001847.1 + 124159 0.71 0.849446
Target:  5'- -aGUGCAGgcGCCAAGAgacuuCGCGCGCc- -3'
miRNA:   3'- ggCGCGUCuuUGGUUCU-----GUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 124020 0.66 0.981988
Target:  5'- gCCGCGUccaAGAAGCCGuccuccagcgccacGACGC-CGUGGu -3'
miRNA:   3'- -GGCGCG---UCUUUGGUu-------------CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 123691 0.66 0.983193
Target:  5'- aCGCGCAcGGuAGCC---GCugGCGCGGg -3'
miRNA:   3'- gGCGCGU-CU-UUGGuucUGugUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.