miRNA display CGI


Results 121 - 140 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 110751 0.66 0.976513
Target:  5'- cCCGCGCGcgccgcGCCgGAGuucGCGCAUGCGGg -3'
miRNA:   3'- -GGCGCGUcuu---UGG-UUC---UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 110228 0.66 0.978926
Target:  5'- aCGUGCGGGccguGCUAA-ACAUGCGCGGc -3'
miRNA:   3'- gGCGCGUCUu---UGGUUcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 109816 0.67 0.953722
Target:  5'- aCGaUGCGGGAGCCGgccuuuGGGCGCGCccucgucgGCGAg -3'
miRNA:   3'- gGC-GCGUCUUUGGU------UCUGUGUG--------CGCU- -5'
6500 3' -52.4 NC_001847.1 + 109344 0.72 0.768972
Target:  5'- aCGCgGCGGAgcAGCuCGAGGCcgaGCACGCGGa -3'
miRNA:   3'- gGCG-CGUCU--UUG-GUUCUG---UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 108762 0.7 0.857463
Target:  5'- gCCGCGCuGGgcGCC-GGACGCGCcggGCGGc -3'
miRNA:   3'- -GGCGCG-UCuuUGGuUCUGUGUG---CGCU- -5'
6500 3' -52.4 NC_001847.1 + 108644 0.69 0.91934
Target:  5'- aCGCuGCAGAAgugGCCGGGGC-CGCGgaCGAg -3'
miRNA:   3'- gGCG-CGUCUU---UGGUUCUGuGUGC--GCU- -5'
6500 3' -52.4 NC_001847.1 + 108365 0.72 0.768972
Target:  5'- gCGCGCAGGA----GGGCGCGCGCa- -3'
miRNA:   3'- gGCGCGUCUUugguUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 108158 0.68 0.930408
Target:  5'- aCCGCGCc---GCCGcAGACGCGCuGCGc -3'
miRNA:   3'- -GGCGCGucuuUGGU-UCUGUGUG-CGCu -5'
6500 3' -52.4 NC_001847.1 + 108029 0.77 0.532768
Target:  5'- cUCGcCGCGGcgGCCGgcgGGGCGCGCGCGGc -3'
miRNA:   3'- -GGC-GCGUCuuUGGU---UCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 107642 0.66 0.976513
Target:  5'- gCCGCgGCGGcgGCCGAGGCcucuGC-CGcCGAa -3'
miRNA:   3'- -GGCG-CGUCuuUGGUUCUG----UGuGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 107329 0.66 0.978693
Target:  5'- gCCGCGCGugcGCCGGGGCGCGaauggccagagccCGCa- -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUGUGU-------------GCGcu -5'
6500 3' -52.4 NC_001847.1 + 106792 0.69 0.925
Target:  5'- -gGCGcCGGggGCCcGGGCGCGCGg-- -3'
miRNA:   3'- ggCGC-GUCuuUGGuUCUGUGUGCgcu -5'
6500 3' -52.4 NC_001847.1 + 106747 0.7 0.872848
Target:  5'- cCCGCGCuGgcGCCGcggcgggggGGGCGCcgucuccgGCGCGAg -3'
miRNA:   3'- -GGCGCGuCuuUGGU---------UCUGUG--------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 106601 0.75 0.636411
Target:  5'- cCCGCGCc---GCCGAaGCGCACGCGGc -3'
miRNA:   3'- -GGCGCGucuuUGGUUcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 106097 0.67 0.957655
Target:  5'- aCCGCcuGCAGcacgucuGCC--GGCGCGCGCGGc -3'
miRNA:   3'- -GGCG--CGUCuu-----UGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 106088 0.67 0.957655
Target:  5'- gCCGCGCGGccGgCGAG-CACgGCGCGc -3'
miRNA:   3'- -GGCGCGUCuuUgGUUCuGUG-UGCGCu -5'
6500 3' -52.4 NC_001847.1 + 105842 0.68 0.945136
Target:  5'- gCCGCGCcGAGcagcucggcgGCCcGGAgCACGCGCu- -3'
miRNA:   3'- -GGCGCGuCUU----------UGGuUCU-GUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 105803 0.71 0.849446
Target:  5'- gCCGCGCGcuGGAGCC---GCGCGCGCu- -3'
miRNA:   3'- -GGCGCGU--CUUUGGuucUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 105735 0.77 0.540892
Target:  5'- gCGCGCAGGucaAACCAGGuuaggagggccuCGCGCGCGGc -3'
miRNA:   3'- gGCGCGUCU---UUGGUUCu-----------GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 105721 0.67 0.961352
Target:  5'- aCCGCGCGagcGggGCCAcGGuccGCGCcgccaGCGCGGc -3'
miRNA:   3'- -GGCGCGU---CuuUGGU-UC---UGUG-----UGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.