miRNA display CGI


Results 101 - 120 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 63450 0.73 0.749443
Target:  5'- aCCGCGCAGAcGC--GGACGCG-GCGGg -3'
miRNA:   3'- -GGCGCGUCUuUGguUCUGUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 63761 0.73 0.759267
Target:  5'- gCgGCGCGGGccaGGCCcgGAGAC-CGCGCGGa -3'
miRNA:   3'- -GgCGCGUCU---UUGG--UUCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 6683 0.73 0.759267
Target:  5'- gCCGCgGCGGccGGCC-GGGCGCGCGCGc -3'
miRNA:   3'- -GGCG-CGUCu-UUGGuUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 59861 0.72 0.768972
Target:  5'- -gGCGCGGucGCCgAGGGCcgGCGCGCGGc -3'
miRNA:   3'- ggCGCGUCuuUGG-UUCUG--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 3724 0.72 0.768972
Target:  5'- gCGCGCGccGGCCAcGGcGCGCACGCGGc -3'
miRNA:   3'- gGCGCGUcuUUGGU-UC-UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 104374 0.73 0.729482
Target:  5'- aCGCGCcgcGAGGCCAGcacGGCGCGCGCc- -3'
miRNA:   3'- gGCGCGu--CUUUGGUU---CUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 94189 0.73 0.729482
Target:  5'- cUCGCGCGGGcaguUCGAGGCgcuGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUuu--GGUUCUG---UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 33632 0.74 0.667794
Target:  5'- -gGCGCGGcggcuGACCGcgAGGCGCGCGCGc -3'
miRNA:   3'- ggCGCGUCu----UUGGU--UCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 77106 0.74 0.677167
Target:  5'- gCGCGCGGuAGCggcggggcugcuuCAAGGCGCGCGCGc -3'
miRNA:   3'- gGCGCGUCuUUG-------------GUUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 34675 0.74 0.678206
Target:  5'- gCCGCGCAGcgGCaggagGAGcGCugGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGg----UUC-UGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 33675 0.74 0.678206
Target:  5'- cCCGCGCGGGGcuaGAGGCGCAgGCGc -3'
miRNA:   3'- -GGCGCGUCUUuggUUCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 36760 0.74 0.678206
Target:  5'- cCUGCGCcuGGAGAUCGAGcGCGCcCGCGAc -3'
miRNA:   3'- -GGCGCG--UCUUUGGUUC-UGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 72671 0.74 0.678206
Target:  5'- aCCGUGCGGcAGCCuguGGCACaccACGCGGc -3'
miRNA:   3'- -GGCGCGUCuUUGGuu-CUGUG---UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 82879 0.74 0.688579
Target:  5'- cCCGUGCGGGcgcgccgcAGCCAAGccGCGgCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCU--------UUGGUUC--UGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36418 0.74 0.69478
Target:  5'- gCGCGCAGAcccugcgacgcgcGCCGuagcGGCGCGCGCGGc -3'
miRNA:   3'- gGCGCGUCUu------------UGGUu---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 82345 0.74 0.698902
Target:  5'- gUGCGCGGc-GCCAGGGCGCACuGCa- -3'
miRNA:   3'- gGCGCGUCuuUGGUUCUGUGUG-CGcu -5'
6500 3' -52.4 NC_001847.1 + 75768 0.74 0.708144
Target:  5'- gCCGCGCGGGugaacacGGCCGcGGGCucggcgcgGCGCGCGAc -3'
miRNA:   3'- -GGCGCGUCU-------UUGGU-UCUG--------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 32794 0.74 0.709167
Target:  5'- aCGCGC-GAGuCCGAGcgcucuuugaGCGCGCGCGAg -3'
miRNA:   3'- gGCGCGuCUUuGGUUC----------UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 34587 0.73 0.719364
Target:  5'- cCUGCGCA-AGGCCcGGGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcUUUGGuUCUGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 30728 0.73 0.719364
Target:  5'- cCCGCGCGGAcguGGCCGacuGGGCGgGCGUa- -3'
miRNA:   3'- -GGCGCGUCU---UUGGU---UCUGUgUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.