miRNA display CGI


Results 121 - 140 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 16704 0.72 0.797283
Target:  5'- gCCGCcaccaGCAGGAgccccacggcGCCGAGAcCGCAgGCGAc -3'
miRNA:   3'- -GGCG-----CGUCUU----------UGGUUCU-GUGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 33524 0.72 0.797283
Target:  5'- gCCGcCGCGGAGGCgCcGGGCGCGgGCGc -3'
miRNA:   3'- -GGC-GCGUCUUUG-GuUCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 40155 0.73 0.749443
Target:  5'- gCGCGCAGcugcgccaAAGCCGcggGGGCuGCGCGCGGc -3'
miRNA:   3'- gGCGCGUC--------UUUGGU---UCUG-UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 38019 0.73 0.749443
Target:  5'- cUCGCGCGGguGCUGuGGGCGCGCGCc- -3'
miRNA:   3'- -GGCGCGUCuuUGGU-UCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 51420 0.73 0.749443
Target:  5'- gCgGCGCAGAcggAGCCGcc-CGCGCGCGAc -3'
miRNA:   3'- -GgCGCGUCU---UUGGUucuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 82879 0.74 0.688579
Target:  5'- cCCGUGCGGGcgcgccgcAGCCAAGccGCGgCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCU--------UUGGUUC--UGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 36418 0.74 0.69478
Target:  5'- gCGCGCAGAcccugcgacgcgcGCCGuagcGGCGCGCGCGGc -3'
miRNA:   3'- gGCGCGUCUu------------UGGUu---CUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 82345 0.74 0.698902
Target:  5'- gUGCGCGGc-GCCAGGGCGCACuGCa- -3'
miRNA:   3'- gGCGCGUCuuUGGUUCUGUGUG-CGcu -5'
6500 3' -52.4 NC_001847.1 + 75768 0.74 0.708144
Target:  5'- gCCGCGCGGGugaacacGGCCGcGGGCucggcgcgGCGCGCGAc -3'
miRNA:   3'- -GGCGCGUCU-------UUGGU-UCUG--------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 32794 0.74 0.709167
Target:  5'- aCGCGC-GAGuCCGAGcgcucuuugaGCGCGCGCGAg -3'
miRNA:   3'- gGCGCGuCUUuGGUUC----------UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 34587 0.73 0.719364
Target:  5'- cCUGCGCA-AGGCCcGGGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcUUUGGuUCUGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 30728 0.73 0.719364
Target:  5'- cCCGCGCGGAcguGGCCGacuGGGCGgGCGUa- -3'
miRNA:   3'- -GGCGCGUCU---UUGGU---UCUGUgUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 33846 0.72 0.797283
Target:  5'- gCGCGCAGAGcGCagAGGACuGCGCGCGc -3'
miRNA:   3'- gGCGCGUCUU-UGg-UUCUG-UGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 94189 0.73 0.729482
Target:  5'- cUCGCGCGGGcaguUCGAGGCgcuGCGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUuu--GGUUCUG---UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 104374 0.73 0.729482
Target:  5'- aCGCGCcgcGAGGCCAGcacGGCGCGCGCc- -3'
miRNA:   3'- gGCGCGu--CUUUGGUU---CUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 129971 0.73 0.729482
Target:  5'- cCCGCGCcgcGGuaAAACaaaaaaAAGGCACGCGCGGu -3'
miRNA:   3'- -GGCGCG---UC--UUUGg-----UUCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 16327 0.73 0.739511
Target:  5'- uCCGCGCccuAGAcGACCGgcacggccuggAGGCGCugGCGGc -3'
miRNA:   3'- -GGCGCG---UCU-UUGGU-----------UCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 123560 0.73 0.739511
Target:  5'- gCCaGCGCAGAAGCaaccGGCAC-CGCGGc -3'
miRNA:   3'- -GG-CGCGUCUUUGguu-CUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 34027 0.73 0.746475
Target:  5'- aCCGCGCuG-GGCCAGGcgaugggccccgcgGCGCGCGCGu -3'
miRNA:   3'- -GGCGCGuCuUUGGUUC--------------UGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 52310 0.73 0.748455
Target:  5'- -gGCGCGGGcggcgccAACCGGGACaACACGCu- -3'
miRNA:   3'- ggCGCGUCU-------UUGGUUCUG-UGUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.