miRNA display CGI


Results 81 - 100 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 54705 0.66 0.976513
Target:  5'- cCCGCGgGGA-----GGACgACGCGCGGg -3'
miRNA:   3'- -GGCGCgUCUuugguUCUG-UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 22477 0.66 0.976513
Target:  5'- gCCGuCGCAGGugGGgCAAGGCugGcCGUGGc -3'
miRNA:   3'- -GGC-GCGUCU--UUgGUUCUGugU-GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 122831 0.66 0.974971
Target:  5'- gCGCGCAGGugGGCCGucaaguagucuugcgGGGCACccccuuccgggGCGCGc -3'
miRNA:   3'- gGCGCGUCU--UUGGU---------------UCUGUG-----------UGCGCu -5'
6500 3' -52.4 NC_001847.1 + 29036 0.66 0.973903
Target:  5'- gCCGCGCuc--GCCGAGcUGCGCGCc- -3'
miRNA:   3'- -GGCGCGucuuUGGUUCuGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 124264 0.66 0.973903
Target:  5'- gCCGCagGCGGucuGCCuGGGCGCcCGCGc -3'
miRNA:   3'- -GGCG--CGUCuu-UGGuUCUGUGuGCGCu -5'
6500 3' -52.4 NC_001847.1 + 58521 0.66 0.973903
Target:  5'- aCGgGCAGGGACacgaaGAGGcCGC-CGCGGu -3'
miRNA:   3'- gGCgCGUCUUUGg----UUCU-GUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29540 0.66 0.973631
Target:  5'- gCCGCGCucgcggcccuGGAGGCCGccggcggGGGCGCcgGCGCc- -3'
miRNA:   3'- -GGCGCG----------UCUUUGGU-------UCUGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 129905 0.66 0.978926
Target:  5'- cCCcCGCGGAGACCugcacgGAGcCAUGCGCa- -3'
miRNA:   3'- -GGcGCGUCUUUGG------UUCuGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 32132 0.66 0.98115
Target:  5'- -gGCGcCGGggGCgGGGGCGgGgGCGGg -3'
miRNA:   3'- ggCGC-GUCuuUGgUUCUGUgUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 38129 0.66 0.98115
Target:  5'- gUGCGcCGGgcACCGAGuCuuCGCGCGGc -3'
miRNA:   3'- gGCGC-GUCuuUGGUUCuGu-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 71614 0.66 0.971089
Target:  5'- gCgGCGcCAGcAGCgcGGACACGCGCGc -3'
miRNA:   3'- -GgCGC-GUCuUUGguUCUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 130089 0.67 0.968064
Target:  5'- gCCGCGCcc-GACCGcGACGCGgGCu- -3'
miRNA:   3'- -GGCGCGucuUUGGUuCUGUGUgCGcu -5'
6500 3' -52.4 NC_001847.1 + 93749 0.67 0.968064
Target:  5'- aCCGCGCGGu--CCGGGAgcgGCugaGCGAg -3'
miRNA:   3'- -GGCGCGUCuuuGGUUCUg--UGug-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 70242 0.67 0.968064
Target:  5'- aCGCGC-GggGCgGGcGGCggGCGCGCGGc -3'
miRNA:   3'- gGCGCGuCuuUGgUU-CUG--UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 17556 0.67 0.968064
Target:  5'- cCCgGCGCAGAcguuuuGGCCGGGcaGCGCGCc- -3'
miRNA:   3'- -GG-CGCGUCU------UUGGUUCugUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 44382 0.66 0.983193
Target:  5'- gCCGCGCAGGcguuCCGcGACGCG-GUGu -3'
miRNA:   3'- -GGCGCGUCUuu--GGUuCUGUGUgCGCu -5'
6500 3' -52.4 NC_001847.1 + 123691 0.66 0.983193
Target:  5'- aCGCGCAcGGuAGCC---GCugGCGCGGg -3'
miRNA:   3'- gGCGCGU-CU-UUGGuucUGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 92846 0.66 0.982997
Target:  5'- gCCGcCGUAGAAAUUugguucgAGGACGuggcgcCGCGCGAg -3'
miRNA:   3'- -GGC-GCGUCUUUGG-------UUCUGU------GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29623 0.66 0.982997
Target:  5'- -gGUGgAGGAcaugaggGCCGGGGCGC-CGCGGg -3'
miRNA:   3'- ggCGCgUCUU-------UGGUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 125440 0.66 0.98115
Target:  5'- cCCGCGCGuGGcuGGCCGgaGGACGgGCGgGu -3'
miRNA:   3'- -GGCGCGU-CU--UUGGU--UCUGUgUGCgCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.