Results 101 - 120 of 777 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6500 | 3' | -52.4 | NC_001847.1 | + | 88684 | 0.67 | 0.968064 |
Target: 5'- aUGCGCA-AGGCCAuccGCGCGCGCa- -3' miRNA: 3'- gGCGCGUcUUUGGUuc-UGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 43410 | 0.67 | 0.967749 |
Target: 5'- gCGCGCAGGgcgcugcAGCUggGccucGCGuCGCGCGGu -3' miRNA: 3'- gGCGCGUCU-------UUGGuuC----UGU-GUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 113569 | 0.67 | 0.96482 |
Target: 5'- aCGCGUAGcccaaaaagcGGAUgAGGcucacGCACACGCGAu -3' miRNA: 3'- gGCGCGUC----------UUUGgUUC-----UGUGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 28266 | 0.67 | 0.96482 |
Target: 5'- gCCGagGCuGAGGCCGGGACugGgGCc- -3' miRNA: 3'- -GGCg-CGuCUUUGGUUCUGugUgCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 24105 | 0.67 | 0.96482 |
Target: 5'- -gGCGCGGGucCCAGGGCucGCACuCGGg -3' miRNA: 3'- ggCGCGUCUuuGGUUCUG--UGUGcGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 29036 | 0.66 | 0.973903 |
Target: 5'- gCCGCGCuc--GCCGAGcUGCGCGCc- -3' miRNA: 3'- -GGCGCGucuuUGGUUCuGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 122831 | 0.66 | 0.974971 |
Target: 5'- gCGCGCAGGugGGCCGucaaguagucuugcgGGGCACccccuuccgggGCGCGc -3' miRNA: 3'- gGCGCGUCU--UUGGU---------------UCUGUG-----------UGCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 44382 | 0.66 | 0.983193 |
Target: 5'- gCCGCGCAGGcguuCCGcGACGCG-GUGu -3' miRNA: 3'- -GGCGCGUCUuu--GGUuCUGUGUgCGCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 123691 | 0.66 | 0.983193 |
Target: 5'- aCGCGCAcGGuAGCC---GCugGCGCGGg -3' miRNA: 3'- gGCGCGU-CU-UUGGuucUGugUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 92846 | 0.66 | 0.982997 |
Target: 5'- gCCGcCGUAGAAAUUugguucgAGGACGuggcgcCGCGCGAg -3' miRNA: 3'- -GGC-GCGUCUUUGG-------UUCUGU------GUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 29623 | 0.66 | 0.982997 |
Target: 5'- -gGUGgAGGAcaugaggGCCGGGGCGC-CGCGGg -3' miRNA: 3'- ggCGCgUCUU-------UGGUUCUGUGuGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 125440 | 0.66 | 0.98115 |
Target: 5'- cCCGCGCGuGGcuGGCCGgaGGACGgGCGgGu -3' miRNA: 3'- -GGCGCGU-CU--UUGGU--UCUGUgUGCgCu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 38129 | 0.66 | 0.98115 |
Target: 5'- gUGCGcCGGgcACCGAGuCuuCGCGCGGc -3' miRNA: 3'- gGCGC-GUCuuUGGUUCuGu-GUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 32132 | 0.66 | 0.98115 |
Target: 5'- -gGCGcCGGggGCgGGGGCGgGgGCGGg -3' miRNA: 3'- ggCGC-GUCuuUGgUUCUGUgUgCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 129905 | 0.66 | 0.978926 |
Target: 5'- cCCcCGCGGAGACCugcacgGAGcCAUGCGCa- -3' miRNA: 3'- -GGcGCGUCUUUGG------UUCuGUGUGCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 100212 | 0.66 | 0.978926 |
Target: 5'- gCCGCGCAGcugcGCCAGcGGCG-GCGgGAc -3' miRNA: 3'- -GGCGCGUCuu--UGGUU-CUGUgUGCgCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 134650 | 0.66 | 0.978926 |
Target: 5'- gCCGgcaGCAGgcGCgGAGGCGCGgGCa- -3' miRNA: 3'- -GGCg--CGUCuuUGgUUCUGUGUgCGcu -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 17810 | 0.66 | 0.978926 |
Target: 5'- gCGgGCGGGAgggcgccauGCCAGugcGGCGCACGuCGGc -3' miRNA: 3'- gGCgCGUCUU---------UGGUU---CUGUGUGC-GCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 54705 | 0.66 | 0.976513 |
Target: 5'- cCCGCGgGGA-----GGACgACGCGCGGg -3' miRNA: 3'- -GGCGCgUCUuugguUCUG-UGUGCGCU- -5' |
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6500 | 3' | -52.4 | NC_001847.1 | + | 22477 | 0.66 | 0.976513 |
Target: 5'- gCCGuCGCAGGugGGgCAAGGCugGcCGUGGc -3' miRNA: 3'- -GGC-GCGUCU--UUgGUUCUGugU-GCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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