miRNA display CGI


Results 121 - 140 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 80339 0.66 0.98115
Target:  5'- cCCGCGCuc--GCCA--GCGCgGCGCGGa -3'
miRNA:   3'- -GGCGCGucuuUGGUucUGUG-UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 18482 0.66 0.98115
Target:  5'- uCCGUGCGGcAGUCGuaGCGCGCGCGc -3'
miRNA:   3'- -GGCGCGUCuUUGGUucUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 61323 0.67 0.96482
Target:  5'- gUGCGCGGGG--CGGGGCGgGCGCGc -3'
miRNA:   3'- gGCGCGUCUUugGUUCUGUgUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 128836 0.67 0.966144
Target:  5'- gCCGCGCGcaucGAGGCCGAccuCGCcgagguccgcugccuGCGCGAg -3'
miRNA:   3'- -GGCGCGU----CUUUGGUUcu-GUG---------------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 55845 0.67 0.968064
Target:  5'- aCGCGCAGcuGCCAGccGGCGC-CGUu- -3'
miRNA:   3'- gGCGCGUCuuUGGUU--CUGUGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 94851 0.66 0.978926
Target:  5'- uCUGCGCcgagGGGGACCuuGGgGgGCGCGGg -3'
miRNA:   3'- -GGCGCG----UCUUUGGuuCUgUgUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 54281 0.66 0.978926
Target:  5'- gCUGC-CGGAcGGCCucGACGCGCGCc- -3'
miRNA:   3'- -GGCGcGUCU-UUGGuuCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 107329 0.66 0.978693
Target:  5'- gCCGCGCGugcGCCGGGGCGCGaauggccagagccCGCa- -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUGUGU-------------GCGcu -5'
6500 3' -52.4 NC_001847.1 + 54184 0.66 0.976513
Target:  5'- gCGCGCAGAAAgUCGccGCGCAaaaaGCGGc -3'
miRNA:   3'- gGCGCGUCUUU-GGUucUGUGUg---CGCU- -5'
6500 3' -52.4 NC_001847.1 + 69291 0.66 0.975751
Target:  5'- gCCGCGCAGGAAggcgucguagagguCCGAcAC-CACGCc- -3'
miRNA:   3'- -GGCGCGUCUUU--------------GGUUcUGuGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 64207 0.66 0.973903
Target:  5'- aUGCGCGGGucgggguGCCcGGGCGgCGgCGCGAa -3'
miRNA:   3'- gGCGCGUCUu------UGGuUCUGU-GU-GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 128678 0.66 0.973903
Target:  5'- gCCGUGCGGGAcuGCCu-GGC-CACGUa- -3'
miRNA:   3'- -GGCGCGUCUU--UGGuuCUGuGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 50510 0.66 0.973903
Target:  5'- gCGCGCAGcAGCCGcGGCAUggccccgcucgaAgGCGAc -3'
miRNA:   3'- gGCGCGUCuUUGGUuCUGUG------------UgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 58521 0.66 0.973903
Target:  5'- aCGgGCAGGGACacgaaGAGGcCGC-CGCGGu -3'
miRNA:   3'- gGCgCGUCUUUGg----UUCU-GUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 14959 0.66 0.973081
Target:  5'- cUCGCGCGGccacACCAccauccagagcaacAGGCACcgcauCGCGAg -3'
miRNA:   3'- -GGCGCGUCuu--UGGU--------------UCUGUGu----GCGCU- -5'
6500 3' -52.4 NC_001847.1 + 98919 0.66 0.971089
Target:  5'- cCUGCGCGucGAAggccGCCAGGAgGgCGCGCa- -3'
miRNA:   3'- -GGCGCGU--CUU----UGGUUCUgU-GUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 14038 0.66 0.971089
Target:  5'- gCGCGCAGuuuACCGucgcGGCGCagaGCGCa- -3'
miRNA:   3'- gGCGCGUCuu-UGGUu---CUGUG---UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 58701 0.67 0.968064
Target:  5'- gCCGCgGCGGAAAaguccGCGCGCGCGc -3'
miRNA:   3'- -GGCG-CGUCUUUgguucUGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 129276 0.67 0.968064
Target:  5'- gCGCGCAGcgcuGGACCAccucgaGGGC-CAgGCGGc -3'
miRNA:   3'- gGCGCGUC----UUUGGU------UCUGuGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 92196 0.67 0.968064
Target:  5'- uCCGUGCGGAA------GCACACGUGGa -3'
miRNA:   3'- -GGCGCGUCUUugguucUGUGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.