miRNA display CGI


Results 1 - 20 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 90010 0.66 0.971089
Target:  5'- aCCcCGCAGAAggcGCCGAGcuGCACcuGCGCu- -3'
miRNA:   3'- -GGcGCGUCUU---UGGUUC--UGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 35009 0.66 0.973903
Target:  5'- cCCGgcCGCGGAcgugGGCCA--GCugACGCGGu -3'
miRNA:   3'- -GGC--GCGUCU----UUGGUucUGugUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 133551 0.66 0.971089
Target:  5'- gCCGCGCGcuGGcCCGAGcggcGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUU-GGUUC----UGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 83441 0.66 0.973903
Target:  5'- aCGCGUucGAccCCGAcGACGgCGCGCGAc -3'
miRNA:   3'- gGCGCGu-CUuuGGUU-CUGU-GUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 67859 0.66 0.973903
Target:  5'- gCCGCGCc---ACCAAGucccCGCGCGCc- -3'
miRNA:   3'- -GGCGCGucuuUGGUUCu---GUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 97155 0.66 0.971089
Target:  5'- cCCGgGCcuccccaaAGAcacuGCCGGcGCGCACGCGGg -3'
miRNA:   3'- -GGCgCG--------UCUu---UGGUUcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 10 0.66 0.972239
Target:  5'- cCCGCGCGGGGggcGCgGAGAaaaaaaaaauuuuuuC-CGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU---UGgUUCU---------------GuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 70309 0.66 0.973903
Target:  5'- gCCGCGCuggucucGGAGCUGAaGCGCccgguGCGCGAc -3'
miRNA:   3'- -GGCGCGu------CUUUGGUUcUGUG-----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 91720 0.66 0.971089
Target:  5'- aCCGCGCGacgcGAGGCCcAGcugcagcgcccuGCGCGCGuCGGc -3'
miRNA:   3'- -GGCGCGU----CUUUGGuUC------------UGUGUGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 132353 0.66 0.973631
Target:  5'- gCCGCGCucgcggcccuGGAGGCCGccggcggGGGCGCcgGCGCc- -3'
miRNA:   3'- -GGCGCG----------UCUUUGGU-------UCUGUG--UGCGcu -5'
6500 3' -52.4 NC_001847.1 + 69350 0.66 0.971089
Target:  5'- gCgGCGCuGguGCU--GGCGCGCGCGGc -3'
miRNA:   3'- -GgCGCGuCuuUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 90513 0.66 0.973903
Target:  5'- gUGCuGCAGGAGCUGGcGCGCAUGCuGAa -3'
miRNA:   3'- gGCG-CGUCUUUGGUUcUGUGUGCG-CU- -5'
6500 3' -52.4 NC_001847.1 + 87993 0.66 0.974971
Target:  5'- cCCGgcUGCAGAAGagcacgcaaaccuucCCGGGcCACGCGCGc -3'
miRNA:   3'- -GGC--GCGUCUUU---------------GGUUCuGUGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 29299 0.66 0.970204
Target:  5'- -gGCgGCAGAGGCCGcggccgcGGACAagcgagccgcgaGCGCGAg -3'
miRNA:   3'- ggCG-CGUCUUUGGU-------UCUGUg-----------UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 131849 0.66 0.973903
Target:  5'- gCCGCGCuc--GCCGAGcUGCGCGCc- -3'
miRNA:   3'- -GGCGCGucuuUGGUUCuGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 58687 0.66 0.971089
Target:  5'- -gGCgGCAGGcuGGCCAuGGCGCugGCa- -3'
miRNA:   3'- ggCG-CGUCU--UUGGUuCUGUGugCGcu -5'
6500 3' -52.4 NC_001847.1 + 92736 0.66 0.973903
Target:  5'- cUCGCGCAGcgcguggcAGGCCAGGAC-CuCGCc- -3'
miRNA:   3'- -GGCGCGUC--------UUUGGUUCUGuGuGCGcu -5'
6500 3' -52.4 NC_001847.1 + 48033 0.66 0.973903
Target:  5'- gCCGCGCGcuGGCCgAAGACACcuuguagaaaaGCuGCGGg -3'
miRNA:   3'- -GGCGCGUcuUUGG-UUCUGUG-----------UG-CGCU- -5'
6500 3' -52.4 NC_001847.1 + 27788 0.66 0.974971
Target:  5'- aCUGCGCGGcgggugcgggcucuGGCCAuucgcgccccGGcGCACGCGCGGc -3'
miRNA:   3'- -GGCGCGUCu-------------UUGGU----------UC-UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 16980 0.66 0.971089
Target:  5'- uCCaGCGCAGGGagacgcGCCccucgGGGACGCAgCGCGc -3'
miRNA:   3'- -GG-CGCGUCUU------UGG-----UUCUGUGU-GCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.