miRNA display CGI


Results 1 - 20 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 13801 1.12 0.004253
Target:  5'- gCCGCGCAGAAACCAAGACACACGCGAg -3'
miRNA:   3'- -GGCGCGUCUUUGGUUCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 35501 0.88 0.135671
Target:  5'- gCGCGCGGAGGCCAcGGCGCGCGcCGAg -3'
miRNA:   3'- gGCGCGUCUUUGGUuCUGUGUGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 104330 0.81 0.318919
Target:  5'- gCGCGUAGGcGGCCucGGCGCGCGCGAa -3'
miRNA:   3'- gGCGCGUCU-UUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 1517 0.81 0.318919
Target:  5'- gCGCGUAGGcGGCCucGGCGCGCGCGAa -3'
miRNA:   3'- gGCGCGUCU-UUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 32839 0.81 0.341862
Target:  5'- cCCGCGUGGccGCCGAGACcgcggcgcucGCGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGGUUCUG----------UGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 116146 0.81 0.349771
Target:  5'- gCGCGCGGc--CCGAGGCGCugGCGGc -3'
miRNA:   3'- gGCGCGUCuuuGGUUCUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 35959 0.8 0.391234
Target:  5'- cUCGCGCgAGGAccacgagggcGCCAAGGCGCGCGCa- -3'
miRNA:   3'- -GGCGCG-UCUU----------UGGUUCUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 74399 0.79 0.399903
Target:  5'- aCCGCGCGGccGCCGc-GCGCGCGCGGg -3'
miRNA:   3'- -GGCGCGUCuuUGGUucUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 74720 0.79 0.399903
Target:  5'- gCGCGUGGAcGCCGAGccuucggcgcuuGCGCGCGCGAg -3'
miRNA:   3'- gGCGCGUCUuUGGUUC------------UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29373 0.79 0.417604
Target:  5'- aCCGCGCGGcgGCCgGAGcugcCGCGCGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGG-UUCu---GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 129682 0.79 0.434854
Target:  5'- gCCGcCGCAGAGagcgGCCGGGACGCGCuuguggaGCGAg -3'
miRNA:   3'- -GGC-GCGUCUU----UGGUUCUGUGUG-------CGCU- -5'
6500 3' -52.4 NC_001847.1 + 6087 0.79 0.445028
Target:  5'- gCGCGCucgcGGAGGCgCGAGACGCcCGCGAg -3'
miRNA:   3'- gGCGCG----UCUUUG-GUUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 113632 0.78 0.454391
Target:  5'- cCCGCGCGGcccccGCCGAGGCGCGCcCGGc -3'
miRNA:   3'- -GGCGCGUCuu---UGGUUCUGUGUGcGCU- -5'
6500 3' -52.4 NC_001847.1 + 33043 0.78 0.463861
Target:  5'- gCgGCGCAGGaguuuauuGACCGGGuCGCGCGCGGc -3'
miRNA:   3'- -GgCGCGUCU--------UUGGUUCuGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 29469 0.78 0.473432
Target:  5'- cCCGCGCGucGGCCuGGGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUUGGuUCUGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 132282 0.78 0.473432
Target:  5'- cCCGCGCGucGGCCuGGGCGCugGCGc -3'
miRNA:   3'- -GGCGCGUcuUUGGuUCUGUGugCGCu -5'
6500 3' -52.4 NC_001847.1 + 48837 0.78 0.473432
Target:  5'- gCCGCGCGGGGgcGCCucGGC-CGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU--UGGuuCUGuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 86303 0.78 0.492865
Target:  5'- gCCGCGCG---GCCGAGGCGCccccGCGCGGc -3'
miRNA:   3'- -GGCGCGUcuuUGGUUCUGUG----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 102795 0.77 0.501729
Target:  5'- cCCGCGCGGggGCUggGcccccuccgcgccGCGCcGCGCGGg -3'
miRNA:   3'- -GGCGCGUCuuUGGuuC-------------UGUG-UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 104916 0.77 0.502719
Target:  5'- aCGCGCAccucGGCCcGGGCGCGCGCGGc -3'
miRNA:   3'- gGCGCGUcu--UUGGuUCUGUGUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.