miRNA display CGI


Results 1 - 20 of 777 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6500 3' -52.4 NC_001847.1 + 10 0.66 0.972239
Target:  5'- cCCGCGCGGGGggcGCgGAGAaaaaaaaaauuuuuuC-CGCGCGGc -3'
miRNA:   3'- -GGCGCGUCUU---UGgUUCU---------------GuGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 67 0.67 0.96482
Target:  5'- gCGgGCGGggGCgGggugggggauGGGCGCggaGCGCGAg -3'
miRNA:   3'- gGCgCGUCuuUGgU----------UCUGUG---UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 397 0.71 0.832801
Target:  5'- aCCGCGCuccGACCGAGACcgagggcccgggGCGgGCGGg -3'
miRNA:   3'- -GGCGCGucuUUGGUUCUG------------UGUgCGCU- -5'
6500 3' -52.4 NC_001847.1 + 875 0.66 0.983193
Target:  5'- aCGCGCGGcGgcggcccgcGCCGGGGcCGC-CGCGGc -3'
miRNA:   3'- gGCGCGUCuU---------UGGUUCU-GUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 1112 0.67 0.968064
Target:  5'- gCCGCGU----GCCccugcGACGCugGCGAg -3'
miRNA:   3'- -GGCGCGucuuUGGuu---CUGUGugCGCU- -5'
6500 3' -52.4 NC_001847.1 + 1174 0.72 0.797283
Target:  5'- gCCGCGCAGAAgGCCAc--CGC-CGCGGc -3'
miRNA:   3'- -GGCGCGUCUU-UGGUucuGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 1407 0.7 0.880204
Target:  5'- cUCGCGCGGcgGCacGGGCAC-CGCGGu -3'
miRNA:   3'- -GGCGCGUCuuUGguUCUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 1517 0.81 0.318919
Target:  5'- gCGCGUAGGcGGCCucGGCGCGCGCGAa -3'
miRNA:   3'- gGCGCGUCU-UUGGuuCUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 1561 0.73 0.729482
Target:  5'- aCGCGCcgcGAGGCCAGcacGGCGCGCGCc- -3'
miRNA:   3'- gGCGCGu--CUUUGGUU---CUGUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 1748 0.7 0.88733
Target:  5'- gCGCGCAGAGGuacuCCAccGCGC-CGCGGa -3'
miRNA:   3'- gGCGCGUCUUU----GGUucUGUGuGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 2154 0.66 0.978926
Target:  5'- gCUGCGCAGc-ACCAGGucuCGCAgCGCc- -3'
miRNA:   3'- -GGCGCGUCuuUGGUUCu--GUGU-GCGcu -5'
6500 3' -52.4 NC_001847.1 + 2583 0.77 0.502719
Target:  5'- cCUGCGCGGccGCCGcGGcCGCACGCGAg -3'
miRNA:   3'- -GGCGCGUCuuUGGUuCU-GUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 2878 0.69 0.925
Target:  5'- aCGCGCGGGccGCCGcGcCGCGCGuCGAg -3'
miRNA:   3'- gGCGCGUCUu-UGGUuCuGUGUGC-GCU- -5'
6500 3' -52.4 NC_001847.1 + 2908 0.67 0.961352
Target:  5'- aCCGCGCGagcGggGCCAcGGuccGCGCcgccaGCGCGGc -3'
miRNA:   3'- -GGCGCGU---CuuUGGU-UC---UGUG-----UGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 2973 0.71 0.814502
Target:  5'- gCGCGCAGcgccGCCGGGGCcggcgcuggagccGCGCGCGc -3'
miRNA:   3'- gGCGCGUCuu--UGGUUCUG-------------UGUGCGCu -5'
6500 3' -52.4 NC_001847.1 + 3029 0.68 0.945136
Target:  5'- gCCGCGCcGAGcagcucggcgGCCcGGAgCACGCGCu- -3'
miRNA:   3'- -GGCGCGuCUU----------UGGuUCU-GUGUGCGcu -5'
6500 3' -52.4 NC_001847.1 + 3275 0.67 0.957655
Target:  5'- gCCGCGCGGccGgCGAG-CACgGCGCGc -3'
miRNA:   3'- -GGCGCGUCuuUgGUUCuGUG-UGCGCu -5'
6500 3' -52.4 NC_001847.1 + 3724 0.72 0.768972
Target:  5'- gCGCGCGccGGCCAcGGcGCGCACGCGGc -3'
miRNA:   3'- gGCGCGUcuUUGGU-UC-UGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 3788 0.75 0.636411
Target:  5'- cCCGCGCc---GCCGAaGCGCACGCGGc -3'
miRNA:   3'- -GGCGCGucuuUGGUUcUGUGUGCGCU- -5'
6500 3' -52.4 NC_001847.1 + 3907 0.75 0.657351
Target:  5'- gCGCGCGGugGCgcGGACGCACGCa- -3'
miRNA:   3'- gGCGCGUCuuUGguUCUGUGUGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.